Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC139365.2-201ENST00000517972 253 ntBASIC6.15□□□□□ -1.42
USP41Q3LFD5 NRBF2P4-201ENST00000520874 850 ntBASIC6.15□□□□□ -1.42
USP41Q3LFD5 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC6.15□□□□□ -1.42
USP41Q3LFD5 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC6.15□□□□□ -1.42
USP41Q3LFD5 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
USP41Q3LFD5 AC025423.2-201ENST00000537570 439 ntBASIC6.15□□□□□ -1.42
USP41Q3LFD5 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC6.15□□□□□ -1.42
USP41Q3LFD5 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
USP41Q3LFD5 SMARCE1P3-201ENST00000553649 1231 ntBASIC6.15□□□□□ -1.42
USP41Q3LFD5 NPM1P5-201ENST00000557228 838 ntBASIC6.15□□□□□ -1.42
USP41Q3LFD5 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC6.15□□□□□ -1.42
USP41Q3LFD5 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC6.15□□□□□ -1.42
USP41Q3LFD5 AC016180.1-201ENST00000567945 403 ntBASIC6.15□□□□□ -1.42
USP41Q3LFD5 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC6.15□□□□□ -1.42
USP41Q3LFD5 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC6.15□□□□□ -1.42
USP41Q3LFD5 AC005229.3-201ENST00000603438 323 ntBASIC6.15□□□□□ -1.42
USP41Q3LFD5 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC6.15□□□□□ -1.42
USP41Q3LFD5 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
USP41Q3LFD5 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC6.15□□□□□ -1.43
USP41Q3LFD5 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC6.15□□□□□ -1.43
USP41Q3LFD5 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
USP41Q3LFD5 CASC19-248ENST00000641674 1356 ntBASIC6.15□□□□□ -1.43
USP41Q3LFD5 CASC19-255ENST00000641733 1385 ntBASIC6.15□□□□□ -1.43
USP41Q3LFD5 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.43
USP41Q3LFD5 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC6.15□□□□□ -1.43
USP41Q3LFD5 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
USP41Q3LFD5 AL355488.2-201ENST00000609909 2850 ntBASIC6.15□□□□□ -1.43
USP41Q3LFD5 AC137056.2-201ENST00000624055 1958 ntBASIC6.15□□□□□ -1.43
USP41Q3LFD5 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
USP41Q3LFD5 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
USP41Q3LFD5 BX284613.1-201ENST00000452221 1641 ntBASIC6.14□□□□□ -1.43
USP41Q3LFD5 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC6.14□□□□□ -1.43
USP41Q3LFD5 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
USP41Q3LFD5 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USP41Q3LFD5 AL589826.1-201ENST00000340697 249 ntBASIC6.14□□□□□ -1.43
USP41Q3LFD5 RNA5SP131-201ENST00000365452 119 ntBASIC6.14□□□□□ -1.43
USP41Q3LFD5 AL121977.1-201ENST00000401636 979 ntBASIC6.14□□□□□ -1.43
USP41Q3LFD5 AL136116.2-201ENST00000404020 785 ntBASIC6.14□□□□□ -1.43
USP41Q3LFD5 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
USP41Q3LFD5 AC015977.1-201ENST00000418887 292 ntBASIC6.14□□□□□ -1.43
USP41Q3LFD5 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC6.14□□□□□ -1.43
USP41Q3LFD5 AC012075.1-201ENST00000436549 580 ntBASIC6.14□□□□□ -1.43
USP41Q3LFD5 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC6.14□□□□□ -1.43
USP41Q3LFD5 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC6.14□□□□□ -1.43
USP41Q3LFD5 LDHBP2-201ENST00000456969 1005 ntBASIC6.14□□□□□ -1.43
USP41Q3LFD5 AC108751.3-201ENST00000461814 1020 ntBASIC6.14□□□□□ -1.43
USP41Q3LFD5 SEPT7P6-201ENST00000469999 1143 ntBASIC6.14□□□□□ -1.43
USP41Q3LFD5 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC6.14□□□□□ -1.43
USP41Q3LFD5 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC6.14□□□□□ -1.43
USP41Q3LFD5 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC6.14□□□□□ -1.43
USP41Q3LFD5 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USP41Q3LFD5 AC027026.1-201ENST00000532323 742 ntBASIC6.14□□□□□ -1.43
USP41Q3LFD5 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
USP41Q3LFD5 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
USP41Q3LFD5 DPPA3P2-202ENST00000557188 1219 ntBASIC6.14□□□□□ -1.43
USP41Q3LFD5 RBM22P12-201ENST00000567098 1255 ntBASIC6.14□□□□□ -1.43
USP41Q3LFD5 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC6.14□□□□□ -1.43
USP41Q3LFD5 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC6.14□□□□□ -1.43
USP41Q3LFD5 AC107993.1-201ENST00000591343 684 ntBASIC6.14□□□□□ -1.43
USP41Q3LFD5 AC096586.2-201ENST00000610260 441 ntBASIC6.14□□□□□ -1.43
USP41Q3LFD5 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC6.14□□□□□ -1.43
USP41Q3LFD5 AL355974.3-201ENST00000617383 467 ntBASIC6.14□□□□□ -1.43
USP41Q3LFD5 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USP41Q3LFD5 AC117409.1-201ENST00000470499 1310 ntBASIC6.14□□□□□ -1.43
USP41Q3LFD5 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.14□□□□□ -1.43
USP41Q3LFD5 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
USP41Q3LFD5 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USP41Q3LFD5 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USP41Q3LFD5 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
USP41Q3LFD5 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC6.14□□□□□ -1.43
USP41Q3LFD5 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
USP41Q3LFD5 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USP41Q3LFD5 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
USP41Q3LFD5 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC6.14□□□□□ -1.43
USP41Q3LFD5 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
USP41Q3LFD5 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.13□□□□□ -1.43
USP41Q3LFD5 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
USP41Q3LFD5 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USP41Q3LFD5 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
USP41Q3LFD5 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 OR9K1P-201ENST00000326513 941 ntBASIC6.13□□□□□ -1.43
USP41Q3LFD5 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 Z93019.1-201ENST00000416450 973 ntBASIC6.13□□□□□ -1.43
USP41Q3LFD5 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USP41Q3LFD5 EIF4A1P7-201ENST00000421800 1220 ntBASIC6.13□□□□□ -1.43
USP41Q3LFD5 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 AL390119.1-201ENST00000440329 312 ntBASIC6.13□□□□□ -1.43
USP41Q3LFD5 AC015983.1-201ENST00000441577 373 ntBASIC6.13□□□□□ -1.43
USP41Q3LFD5 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 ACTR6P1-201ENST00000514311 1104 ntBASIC6.13□□□□□ -1.43
USP41Q3LFD5 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 AC011270.1-201ENST00000558606 583 ntBASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms