Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX2P35548 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX2P35548 AC006338.2-201ENST00000616864 791 ntBASIC6.06□□□□□ -1.44
MSX2P35548 AC022079.2-201ENST00000619739 566 ntBASIC6.06□□□□□ -1.44
MSX2P35548 AL031667.3-201ENST00000620124 655 ntBASIC6.06□□□□□ -1.44
MSX2P35548 BX005040.2-201ENST00000620504 370 ntBASIC6.06□□□□□ -1.44
MSX2P35548 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC6.06□□□□□ -1.44
MSX2P35548 FKBP1AP4-201ENST00000631775 336 ntBASIC6.06□□□□□ -1.44
MSX2P35548 AC103706.2-201ENST00000638080 240 ntBASIC6.06□□□□□ -1.44
MSX2P35548 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
MSX2P35548 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX2P35548 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX2P35548 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX2P35548 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX2P35548 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
MSX2P35548 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX2P35548 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC6.05□□□□□ -1.44
MSX2P35548 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSX2P35548 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSX2P35548 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
MSX2P35548 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSX2P35548 MED31-201ENST00000225728 1654 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSX2P35548 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
MSX2P35548 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC6.05□□□□□ -1.44
MSX2P35548 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.05□□□□□ -1.44
MSX2P35548 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSX2P35548 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSX2P35548 DYDC2-201ENST00000256039 1842 ntAPPRIS P3 TSL 2 BASIC6.05□□□□□ -1.44
MSX2P35548 NCOA4P2-201ENST00000340589 1813 ntBASIC6.05□□□□□ -1.44
MSX2P35548 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSX2P35548 OR7D4-201ENST00000308682 1022 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
MSX2P35548 AC096571.1-201ENST00000325407 306 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
MSX2P35548 AC074375.1-201ENST00000372993 192 ntBASIC6.05□□□□□ -1.44
MSX2P35548 UBBP1-201ENST00000392399 473 ntBASIC6.05□□□□□ -1.44
MSX2P35548 OR2H1-204ENST00000396792 1294 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
MSX2P35548 RPL5P20-201ENST00000403848 896 ntBASIC6.05□□□□□ -1.44
MSX2P35548 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
MSX2P35548 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC6.05□□□□□ -1.44
MSX2P35548 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC6.05□□□□□ -1.44
MSX2P35548 AC079922.1-201ENST00000443291 359 ntBASIC6.05□□□□□ -1.44
MSX2P35548 DNAJC19P5-201ENST00000443295 316 ntBASIC6.05□□□□□ -1.44
MSX2P35548 HCG14-201ENST00000444986 413 ntTSL 2 BASIC6.05□□□□□ -1.44
MSX2P35548 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC6.05□□□□□ -1.44
MSX2P35548 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC6.05□□□□□ -1.44
MSX2P35548 AC092675.1-203ENST00000454230 538 ntTSL 5 BASIC6.05□□□□□ -1.44
MSX2P35548 AC091860.1-201ENST00000505723 432 ntBASIC6.05□□□□□ -1.44
MSX2P35548 AC111000.2-201ENST00000507775 550 ntBASIC6.05□□□□□ -1.44
MSX2P35548 AC139491.5-201ENST00000510029 920 ntTSL 5 BASIC6.05□□□□□ -1.44
MSX2P35548 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC6.05□□□□□ -1.44
MSX2P35548 AC092593.2-201ENST00000513866 913 ntBASIC6.05□□□□□ -1.44
MSX2P35548 RNU6-1028P-201ENST00000517164 93 ntBASIC6.05□□□□□ -1.44
MSX2P35548 AC037450.1-201ENST00000518129 647 ntTSL 3 BASIC6.05□□□□□ -1.44
MSX2P35548 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC6.05□□□□□ -1.44
MSX2P35548 HMGB1P1-201ENST00000522557 636 ntBASIC6.05□□□□□ -1.44
MSX2P35548 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
MSX2P35548 AC007068.2-201ENST00000543168 395 ntBASIC6.05□□□□□ -1.44
MSX2P35548 AC092865.1-201ENST00000544395 1023 ntBASIC6.05□□□□□ -1.44
MSX2P35548 AC069240.2-201ENST00000550242 609 ntBASIC6.05□□□□□ -1.44
MSX2P35548 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC6.05□□□□□ -1.44
MSX2P35548 AL391156.1-201ENST00000554965 554 ntBASIC6.05□□□□□ -1.44
MSX2P35548 PSMA3-AS1-206ENST00000555037 446 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
MSX2P35548 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC6.05□□□□□ -1.44
MSX2P35548 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC6.05□□□□□ -1.44
MSX2P35548 GLYATL1P2-202ENST00000588046 902 ntBASIC6.05□□□□□ -1.44
MSX2P35548 AC004987.4-201ENST00000603383 338 ntBASIC6.05□□□□□ -1.44
MSX2P35548 HIRAP1-201ENST00000605318 787 ntBASIC6.05□□□□□ -1.44
MSX2P35548 AL008723.3-201ENST00000608926 449 ntBASIC6.05□□□□□ -1.44
MSX2P35548 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC6.05□□□□□ -1.44
MSX2P35548 PTCHD3P1-201ENST00000612350 537 ntBASIC6.05□□□□□ -1.44
MSX2P35548 U1.41-201ENST00000617626 165 ntBASIC6.05□□□□□ -1.44
MSX2P35548 AC067852.7-201ENST00000623270 535 ntBASIC6.05□□□□□ -1.44
MSX2P35548 GMFB-210ENST00000628554 639 ntTSL 4 BASIC6.05□□□□□ -1.44
MSX2P35548 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC6.05□□□□□ -1.44
MSX2P35548 AC012078.1-201ENST00000405035 1646 ntBASIC6.05□□□□□ -1.44
MSX2P35548 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSX2P35548 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC6.05□□□□□ -1.44
MSX2P35548 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.05□□□□□ -1.44
MSX2P35548 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSX2P35548 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC6.05□□□□□ -1.44
MSX2P35548 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
MSX2P35548 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
MSX2P35548 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
MSX2P35548 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
MSX2P35548 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSX2P35548 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX2P35548 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSX2P35548 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC6.04□□□□□ -1.44
MSX2P35548 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSX2P35548 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
MSX2P35548 AC011455.2-201ENST00000599320 3336 ntBASIC6.04□□□□□ -1.44
MSX2P35548 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSX2P35548 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
MSX2P35548 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms