Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SNORD56.6-201ENST00000384569 71 ntBASIC5.31□□□□□ -1.56
COL5A1P20908 CYP2AC1P-201ENST00000407830 1173 ntBASIC5.31□□□□□ -1.56
COL5A1P20908 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.31□□□□□ -1.56
COL5A1P20908 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.31□□□□□ -1.56
COL5A1P20908 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC5.31□□□□□ -1.56
COL5A1P20908 OR5AZ1P-201ENST00000527448 943 ntBASIC5.31□□□□□ -1.56
COL5A1P20908 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.31□□□□□ -1.56
COL5A1P20908 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.31□□□□□ -1.56
COL5A1P20908 AGGF1P7-201ENST00000562369 913 ntBASIC5.31□□□□□ -1.56
COL5A1P20908 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.31□□□□□ -1.56
COL5A1P20908 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.31□□□□□ -1.56
COL5A1P20908 AP000346.3-201ENST00000622821 210 ntBASIC5.31□□□□□ -1.56
COL5A1P20908 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
COL5A1P20908 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.31□□□□□ -1.56
COL5A1P20908 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL5A1P20908 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.31□□□□□ -1.56
COL5A1P20908 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL5A1P20908 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
COL5A1P20908 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL5A1P20908 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC5.31□□□□□ -1.56
COL5A1P20908 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL5A1P20908 AC005005.4-201ENST00000623789 16698 ntBASIC5.31□□□□□ -1.56
COL5A1P20908 AC073342.2-201ENST00000595842 1800 ntBASIC5.31□□□□□ -1.56
COL5A1P20908 MT-RNR2-201ENST00000387347 1559 ntBASIC5.3□□□□□ -1.56
COL5A1P20908 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A1P20908 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A1P20908 OR9K1P-202ENST00000641111 3217 ntBASIC5.3□□□□□ -1.56
COL5A1P20908 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.3□□□□□ -1.56
COL5A1P20908 RNU4-4P-201ENST00000364588 130 ntBASIC5.3□□□□□ -1.56
COL5A1P20908 AL360081.1-201ENST00000428299 555 ntBASIC5.3□□□□□ -1.56
COL5A1P20908 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A1P20908 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.3□□□□□ -1.56
COL5A1P20908 RPS3AP41-201ENST00000462701 778 ntBASIC5.3□□□□□ -1.56
COL5A1P20908 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.3□□□□□ -1.56
COL5A1P20908 RPS18P6-201ENST00000476880 458 ntBASIC5.3□□□□□ -1.56
COL5A1P20908 AC090114.3-201ENST00000479267 829 ntBASIC5.3□□□□□ -1.56
COL5A1P20908 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.3□□□□□ -1.56
COL5A1P20908 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.3□□□□□ -1.56
COL5A1P20908 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.3□□□□□ -1.56
COL5A1P20908 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.3□□□□□ -1.56
COL5A1P20908 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A1P20908 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
COL5A1P20908 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC5.3□□□□□ -1.56
COL5A1P20908 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A1P20908 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC5.3□□□□□ -1.56
COL5A1P20908 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC5.3□□□□□ -1.56
COL5A1P20908 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A1P20908 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A1P20908 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
COL5A1P20908 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A1P20908 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A1P20908 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
COL5A1P20908 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A1P20908 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
COL5A1P20908 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A1P20908 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
COL5A1P20908 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.3□□□□□ -1.56
COL5A1P20908 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A1P20908 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A1P20908 U3.28-201ENST00000391249 210 ntBASIC5.3□□□□□ -1.56
COL5A1P20908 AL035419.1-201ENST00000397037 564 ntBASIC5.3□□□□□ -1.56
COL5A1P20908 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.3□□□□□ -1.56
COL5A1P20908 OR10T1P-201ENST00000424327 947 ntBASIC5.3□□□□□ -1.56
COL5A1P20908 RPL7P56-201ENST00000429441 717 ntBASIC5.3□□□□□ -1.56
COL5A1P20908 NANOGP9-201ENST00000439890 892 ntBASIC5.3□□□□□ -1.56
COL5A1P20908 AC092324.1-201ENST00000468671 324 ntBASIC5.3□□□□□ -1.56
COL5A1P20908 AP001804.1-201ENST00000526868 919 ntBASIC5.3□□□□□ -1.56
COL5A1P20908 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC5.3□□□□□ -1.56
COL5A1P20908 AC127381.1-201ENST00000555979 939 ntBASIC5.3□□□□□ -1.56
COL5A1P20908 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC5.3□□□□□ -1.56
COL5A1P20908 AC011840.5-201ENST00000582125 771 ntBASIC5.3□□□□□ -1.56
COL5A1P20908 MIR7641-1-201ENST00000627518 61 ntBASIC5.3□□□□□ -1.56
COL5A1P20908 AC074101.1-201ENST00000637861 241 ntBASIC5.3□□□□□ -1.56
COL5A1P20908 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A1P20908 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC5.29□□□□□ -1.56
COL5A1P20908 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A1P20908 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A1P20908 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
COL5A1P20908 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A1P20908 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A1P20908 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
COL5A1P20908 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
COL5A1P20908 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A1P20908 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A1P20908 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A1P20908 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A1P20908 OR55B1P-203ENST00000641518 2602 ntBASIC5.29□□□□□ -1.56
COL5A1P20908 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC5.29□□□□□ -1.56
COL5A1P20908 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
COL5A1P20908 AC011493.1-201ENST00000596753 1632 ntBASIC5.29□□□□□ -1.56
COL5A1P20908 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.29□□□□□ -1.56
COL5A1P20908 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A1P20908 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A1P20908 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A1P20908 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.29□□□□□ -1.56
COL5A1P20908 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.29□□□□□ -1.56
COL5A1P20908 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.29□□□□□ -1.56
COL5A1P20908 AC006466.1-201ENST00000438721 289 ntBASIC5.29□□□□□ -1.56
COL5A1P20908 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.29□□□□□ -1.56
COL5A1P20908 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms