Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC006335.2-201ENST00000437993 330 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 RPL32P28-201ENST00000443577 397 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 MTCO3P10-201ENST00000455912 772 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 AC022730.2-201ENST00000465359 452 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 RPL3P10-201ENST00000476002 1164 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 RPL12P32-201ENST00000484010 494 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 RNU6-583P-201ENST00000516012 92 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 Vault.3-201ENST00000516676 95 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC8.28□□□□□ -1.08
COL9A1P20849 IGHVII-26-2-201ENST00000518751 325 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC8.28□□□□□ -1.08
COL9A1P20849 TPM3P3-201ENST00000521343 354 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 COPS8P3-201ENST00000526024 482 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 GTF2IP11-201ENST00000526931 420 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC8.28□□□□□ -1.08
COL9A1P20849 NANOGNBP2-201ENST00000544753 553 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC8.28□□□□□ -1.08
COL9A1P20849 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC8.28□□□□□ -1.08
COL9A1P20849 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC8.28□□□□□ -1.08
COL9A1P20849 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC8.28□□□□□ -1.08
COL9A1P20849 AC006441.3-201ENST00000580121 456 ntTSL 4 BASIC8.28□□□□□ -1.08
COL9A1P20849 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC8.28□□□□□ -1.08
COL9A1P20849 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC8.28□□□□□ -1.08
COL9A1P20849 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC8.28□□□□□ -1.08
COL9A1P20849 AC113554.1-201ENST00000606284 490 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 RNU6-87P-201ENST00000607561 108 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 Metazoa_SRP.146-201ENST00000619409 286 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 AC099494.2-201ENST00000623371 978 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 AP005242.3-201ENST00000623604 607 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC8.28□□□□□ -1.08
COL9A1P20849 AC135068.12-201ENST00000637370 931 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 CACNB2-209ENST00000396576 4464 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 HHAT-203ENST00000367010 3626 ntAPPRIS P1 TSL 2 BASIC8.28□□□□□ -1.08
COL9A1P20849 NOP2-218ENST00000545200 2751 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 CD36-209ENST00000435819 2365 ntAPPRIS P1 TSL 2 BASIC8.28□□□□□ -1.08
COL9A1P20849 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC8.28□□□□□ -1.08
COL9A1P20849 ACLY-201ENST00000352035 4339 ntAPPRIS P4 TSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 TMX2-201ENST00000278422 1631 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 CHD6-201ENST00000309279 1635 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC8.28□□□□□ -1.08
COL9A1P20849 MED23-209ENST00000539158 1636 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 ABCB1-211ENST00000622132 4778 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 OPTN-204ENST00000378752 3488 ntAPPRIS ALT1 TSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 RIOK3P1-201ENST00000418778 1528 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 PPFIA2-204ENST00000541017 4192 ntTSL 2 BASIC8.28□□□□□ -1.08
COL9A1P20849 LGALS8-202ENST00000323938 1855 ntTSL 5 BASIC8.28□□□□□ -1.08
COL9A1P20849 NEK1-207ENST00000511633 5536 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 STAT4-201ENST00000358470 2769 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.08
COL9A1P20849 ADGRF1-201ENST00000283297 2142 ntTSL 1 (best) BASIC8.27□□□□□ -1.08
COL9A1P20849 AC013444.1-201ENST00000428909 1904 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 BRD7P2-201ENST00000466133 1944 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 SKAP2-201ENST00000345317 3998 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
COL9A1P20849 CWF19L1-201ENST00000354105 1815 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
COL9A1P20849 AC244100.3-202ENST00000617328 1721 ntTSL 2 BASIC8.27□□□□□ -1.09
COL9A1P20849 HPS4-203ENST00000402105 3562 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
COL9A1P20849 PIWIL3-202ENST00000527701 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC8.27□□□□□ -1.09
COL9A1P20849 PCYT1B-203ENST00000379145 5307 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
COL9A1P20849 Y_RNA.25-201ENST00000362528 102 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 Y_RNA.158-201ENST00000363651 101 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 RN7SKP6-201ENST00000364795 319 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 SSX6-201ENST00000376932 562 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 RNU6-456P-201ENST00000384493 107 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 U3.23-201ENST00000391132 200 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 FTH1P3-201ENST00000394290 584 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 MTCYBP4-201ENST00000401524 249 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 NPM1P38-201ENST00000403835 865 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 AC127391.1-201ENST00000411737 98 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 MTND4LP17-201ENST00000414607 293 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 AC007679.2-201ENST00000422116 781 ntTSL 3 BASIC8.27□□□□□ -1.09
COL9A1P20849 GH2-202ENST00000423893 819 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
COL9A1P20849 AC012506.4-202ENST00000430051 572 ntTSL 5 BASIC8.27□□□□□ -1.09
COL9A1P20849 RPEP2-201ENST00000432149 701 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 USP24P1-201ENST00000433802 779 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC8.27□□□□□ -1.09
COL9A1P20849 FO393419.1-201ENST00000443746 355 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 H2AFZP6-201ENST00000444403 394 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 AC005840.2-201ENST00000447193 355 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 MTCO1P42-201ENST00000457379 726 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 MTATP8P1-201ENST00000467115 207 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 AC078785.3-201ENST00000476607 425 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 AC012181.1-201ENST00000479895 423 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 RPL29P23-201ENST00000486188 442 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC8.27□□□□□ -1.09
COL9A1P20849 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
COL9A1P20849 AC006070.1-201ENST00000508151 193 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC8.27□□□□□ -1.09
COL9A1P20849 AC093303.1-201ENST00000514549 295 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 SCARNA21.2-201ENST00000516600 166 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC8.27□□□□□ -1.09
COL9A1P20849 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC8.27□□□□□ -1.09
COL9A1P20849 IGHVIII-82-201ENST00000522058 250 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 PSMA2P1-201ENST00000526365 646 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 AC027544.3-201ENST00000535082 757 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 BNIP3P6-201ENST00000549284 499 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 IGHV1OR15-3-201ENST00000564926 351 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC8.27□□□□□ -1.09
COL9A1P20849 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC8.27□□□□□ -1.09
COL9A1P20849 AP001180.3-201ENST00000582221 145 ntBASIC8.27□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms