Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 CASC19-260ENST00000641828 2001 ntBASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 RN7SKP124-201ENST00000364730 341 ntBASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 AL391422.1-201ENST00000402155 436 ntBASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 RN7SKP166-201ENST00000410812 305 ntBASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 NPM1P4-201ENST00000414095 812 ntBASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 AL022331.1-201ENST00000429025 477 ntBASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 ARAFP2-201ENST00000440565 559 ntBASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 OR7E157P-201ENST00000494376 911 ntBASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 RNU6-943P-201ENST00000516960 98 ntBASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 HMGB1P42-201ENST00000532126 553 ntBASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 AL049872.1-201ENST00000556323 322 ntBASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 NPM1P42-201ENST00000560329 862 ntBASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 GARSP1-201ENST00000570895 719 ntBASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 AC025857.2-201ENST00000602711 238 ntBASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 AL356752.1-201ENST00000615844 593 ntBASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 AC022919.1-201ENST00000624979 626 ntBASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 AL513548.1-201ENST00000562904 1724 ntBASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 AL591135.1-201ENST00000401578 5914 ntBASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
TM9SF3Q9HD45 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 KYNUP3-201ENST00000574386 1341 ntBASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 MTND5P23-201ENST00000430812 1655 ntBASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 AC245100.2-201ENST00000454544 1679 ntBASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 RNA5SP211-201ENST00000365516 117 ntBASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 OR6E1P-201ENST00000414424 923 ntBASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 PTP4A1P1-201ENST00000420539 515 ntBASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 TNPO1P1-201ENST00000423641 1138 ntBASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 DEFA9P-201ENST00000433042 285 ntBASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 AL731534.1-201ENST00000434711 269 ntBASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 RN7SL72P-201ENST00000460697 269 ntBASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 AL133445.1-201ENST00000467051 452 ntBASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 RN7SL184P-201ENST00000488308 297 ntBASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms