Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL589765.6-201ENST00000601909 549 ntBASIC7.15□□□□□ -1.26
LIG3P49916 CLPTM1LP1-201ENST00000604519 484 ntBASIC7.15□□□□□ -1.26
LIG3P49916 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC7.15□□□□□ -1.26
LIG3P49916 LRMDA-216ENST00000611306 393 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.26
LIG3P49916 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC7.15□□□□□ -1.26
LIG3P49916 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC7.15□□□□□ -1.26
LIG3P49916 AC025262.3-201ENST00000623666 360 ntBASIC7.15□□□□□ -1.26
LIG3P49916 AC011815.3-201ENST00000624194 473 ntBASIC7.15□□□□□ -1.26
LIG3P49916 BANCR-201ENST00000624238 473 ntTSL 2 BASIC7.15□□□□□ -1.26
LIG3P49916 OR5BE1P-202ENST00000641168 1176 ntBASIC7.15□□□□□ -1.26
LIG3P49916 AL139254.2-202ENST00000641937 1156 ntBASIC7.15□□□□□ -1.26
LIG3P49916 EEF1A1P14-201ENST00000421195 1376 ntBASIC7.15□□□□□ -1.26
LIG3P49916 AC025263.3-201ENST00000622965 1396 ntBASIC7.15□□□□□ -1.26
LIG3P49916 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC7.15□□□□□ -1.26
LIG3P49916 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
LIG3P49916 NPIPB15-201ENST00000429990 1428 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.27
LIG3P49916 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
LIG3P49916 AL356361.1-201ENST00000400943 1459 ntBASIC7.15□□□□□ -1.27
LIG3P49916 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC7.15□□□□□ -1.27
LIG3P49916 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.27
LIG3P49916 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC7.15□□□□□ -1.27
LIG3P49916 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC7.15□□□□□ -1.27
LIG3P49916 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.27
LIG3P49916 AC090771.1-201ENST00000585803 1618 ntBASIC7.15□□□□□ -1.27
LIG3P49916 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
LIG3P49916 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
LIG3P49916 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
LIG3P49916 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC7.15□□□□□ -1.27
LIG3P49916 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.27
LIG3P49916 LRRC31-201ENST00000264676 2355 ntAPPRIS ALT2 TSL 2 BASIC7.15□□□□□ -1.27
LIG3P49916 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC7.15□□□□□ -1.27
LIG3P49916 COG2-209ENST00000534989 2963 ntTSL 2 BASIC7.14□□□□□ -1.27
LIG3P49916 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIG3P49916 SCGB1A1-201ENST00000278282 441 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIG3P49916 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIG3P49916 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIG3P49916 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIG3P49916 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIG3P49916 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
LIG3P49916 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC7.14□□□□□ -1.27
LIG3P49916 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC7.14□□□□□ -1.27
LIG3P49916 KARSP2-201ENST00000415696 1639 ntBASIC7.14□□□□□ -1.27
LIG3P49916 NCLP2-201ENST00000416078 1462 ntBASIC7.14□□□□□ -1.27
LIG3P49916 LIX1L-AS1-203ENST00000421764 287 ntTSL 2 BASIC7.14□□□□□ -1.27
LIG3P49916 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC7.14□□□□□ -1.27
LIG3P49916 AL606804.1-201ENST00000435333 538 ntTSL 3 BASIC7.14□□□□□ -1.27
LIG3P49916 AL451136.1-201ENST00000435399 325 ntBASIC7.14□□□□□ -1.27
LIG3P49916 LINC02532-207ENST00000436659 1387 ntTSL 2 BASIC7.14□□□□□ -1.27
LIG3P49916 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC7.14□□□□□ -1.27
LIG3P49916 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
LIG3P49916 MTND6P5-201ENST00000448266 512 ntBASIC7.14□□□□□ -1.27
LIG3P49916 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC7.14□□□□□ -1.27
LIG3P49916 AC013727.1-202ENST00000455716 580 ntTSL 4 BASIC7.14□□□□□ -1.27
LIG3P49916 AL356157.1-201ENST00000456722 732 ntTSL 3 BASIC7.14□□□□□ -1.27
LIG3P49916 TREML3P-201ENST00000457327 501 ntBASIC7.14□□□□□ -1.27
LIG3P49916 AC084754.1-201ENST00000463466 464 ntBASIC7.14□□□□□ -1.27
LIG3P49916 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
LIG3P49916 AC104689.1-201ENST00000473356 768 ntBASIC7.14□□□□□ -1.27
LIG3P49916 RPL30P6-201ENST00000475925 342 ntBASIC7.14□□□□□ -1.27
LIG3P49916 AL591122.1-201ENST00000487348 492 ntBASIC7.14□□□□□ -1.27
LIG3P49916 ZNF525-204ENST00000491101 569 ntTSL 4 BASIC7.14□□□□□ -1.27
LIG3P49916 RN7SL518P-201ENST00000491887 280 ntBASIC7.14□□□□□ -1.27
LIG3P49916 AC026826.1-201ENST00000493002 361 ntBASIC7.14□□□□□ -1.27
LIG3P49916 OR7E157P-201ENST00000494376 911 ntBASIC7.14□□□□□ -1.27
LIG3P49916 AC104971.1-201ENST00000495117 578 ntBASIC7.14□□□□□ -1.27
LIG3P49916 INPP4B-212ENST00000507861 1506 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
LIG3P49916 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC7.14□□□□□ -1.27
LIG3P49916 ANKRD20A17P-201ENST00000511745 1330 ntBASIC7.14□□□□□ -1.27
LIG3P49916 AC017007.1-201ENST00000511960 415 ntBASIC7.14□□□□□ -1.27
LIG3P49916 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC7.14□□□□□ -1.27
LIG3P49916 RNA5SP96-201ENST00000516041 107 ntBASIC7.14□□□□□ -1.27
LIG3P49916 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC7.14□□□□□ -1.27
LIG3P49916 IGHVII-51-2-201ENST00000519778 259 ntBASIC7.14□□□□□ -1.27
LIG3P49916 COX6C-205ENST00000520468 1098 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIG3P49916 AC060788.1-201ENST00000521318 469 ntBASIC7.14□□□□□ -1.27
LIG3P49916 OR7E154P-201ENST00000525174 932 ntBASIC7.14□□□□□ -1.27
LIG3P49916 OR5AK3P-201ENST00000527486 1297 ntBASIC7.14□□□□□ -1.27
LIG3P49916 AP000662.1-201ENST00000530952 487 ntBASIC7.14□□□□□ -1.27
LIG3P49916 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC7.14□□□□□ -1.27
LIG3P49916 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC7.14□□□□□ -1.27
LIG3P49916 MIR4800-201ENST00000537353 80 ntBASIC7.14□□□□□ -1.27
LIG3P49916 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC7.14□□□□□ -1.27
LIG3P49916 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIG3P49916 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC7.14□□□□□ -1.27
LIG3P49916 AC068831.6-201ENST00000560522 795 ntTSL 3 BASIC7.14□□□□□ -1.27
LIG3P49916 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC7.14□□□□□ -1.27
LIG3P49916 AGGF1P4-201ENST00000568249 801 ntBASIC7.14□□□□□ -1.27
LIG3P49916 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC7.14□□□□□ -1.27
LIG3P49916 MTATP6P3-201ENST00000581686 676 ntBASIC7.14□□□□□ -1.27
LIG3P49916 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC7.14□□□□□ -1.27
LIG3P49916 AC008759.1-201ENST00000589783 983 ntBASIC7.14□□□□□ -1.27
LIG3P49916 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC7.14□□□□□ -1.27
LIG3P49916 AC011497.2-201ENST00000600255 639 ntBASIC7.14□□□□□ -1.27
LIG3P49916 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
LIG3P49916 AL356056.3-201ENST00000605984 551 ntTSL 3 BASIC7.14□□□□□ -1.27
LIG3P49916 AC019131.2-201ENST00000609071 870 ntBASIC7.14□□□□□ -1.27
LIG3P49916 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC7.14□□□□□ -1.27
LIG3P49916 AL592148.2-201ENST00000612210 372 ntBASIC7.14□□□□□ -1.27
LIG3P49916 AC004223.4-201ENST00000612426 332 ntBASIC7.14□□□□□ -1.27
LIG3P49916 MIR6883-201ENST00000614952 78 ntBASIC7.14□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms