Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MRPS6P2-201ENST00000381143 370 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 U3.52-201ENST00000384034 216 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 RNU6-1242P-201ENST00000391052 103 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AL035419.1-201ENST00000397037 564 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 VTA1P1-201ENST00000414044 866 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AL359092.1-201ENST00000417156 265 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 OR5M12P-201ENST00000423388 929 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 PRUNEP1-201ENST00000425846 705 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 HIGD1AP12-201ENST00000427832 281 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC128677.1-201ENST00000436016 442 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC002542.1-201ENST00000440683 193 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC010240.2-201ENST00000445363 1205 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 KF459542.1-201ENST00000450908 553 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 SULT1D1P-201ENST00000458020 882 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC015524.1-201ENST00000491585 472 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 FTH1P8-201ENST00000498161 514 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC131392.1-201ENST00000506490 633 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC138866.2-201ENST00000508650 584 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 GUSBP9-201ENST00000510138 584 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 TBCA-209ENST00000522370 435 ntTSL 3 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 OR5AK3P-201ENST00000527486 1297 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AL162632.2-201ENST00000553933 399 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC026956.1-201ENST00000558741 396 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC095057.3-201ENST00000567102 1157 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC005244.1-201ENST00000582566 339 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC069366.1-201ENST00000583159 838 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC015818.6-201ENST00000584274 634 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 MIR212-201ENST00000586026 110 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC091057.2-201ENST00000602594 792 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 SNORD96A-201ENST00000606577 79 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC092106.3-201ENST00000611308 722 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC100847.1-201ENST00000611316 481 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AL512506.2-201ENST00000624472 458 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC017037.3-201ENST00000625016 472 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC119674.1-212ENST00000641155 993 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC062029.1-202ENST00000606164 3651 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 SEC63P2-201ENST00000503863 1939 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 ST7-203ENST00000393443 2360 ntTSL 2 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 MT-RNR2-201ENST00000387347 1559 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 ING3-204ENST00000431467 1447 ntTSL 2 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC007012.2-201ENST00000623206 1676 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 RNU6-1214P-201ENST00000363650 109 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 RNA5SP85-201ENST00000365378 119 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 PAGE2B-201ENST00000374971 493 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 RNU6-452P-201ENST00000384406 107 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 RNA5SP498-201ENST00000411342 120 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 Z75741.2-201ENST00000417272 1167 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms