Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 AC027026.1-201ENST00000532323 742 ntBASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 MIR132-201ENST00000591554 101 ntBASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 AC004890.3-201ENST00000605566 1095 ntBASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 SAMMSON-227ENST00000642114 1199 ntBASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 AC005261.6-201ENST00000623072 1387 ntBASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 AL121768.1-201ENST00000613917 2544 ntBASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC5.89□□□□□ -1.47
HDDC3Q8N4P3 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 REREP1Y-201ENST00000422655 198 ntBASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 TNPO1P1-201ENST00000423641 1138 ntBASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 AL731534.1-201ENST00000434711 269 ntBASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 Z84478.1-201ENST00000438230 1219 ntBASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 RPS12P17-201ENST00000438591 377 ntBASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 REREP2Y-201ENST00000439103 200 ntBASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 CUBNP2-201ENST00000443534 1139 ntBASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 EEF1B2P6-201ENST00000445713 673 ntBASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 AL162739.1-201ENST00000450606 307 ntBASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 AC138866.2-201ENST00000508650 584 ntBASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 AC021146.10-201ENST00000515628 706 ntBASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 RN7SKP248-201ENST00000516278 305 ntBASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 AL049872.1-201ENST00000556323 322 ntBASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 MIR4260-201ENST00000583107 67 ntBASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 AL445670.1-201ENST00000618889 801 ntBASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 MRRFP1-201ENST00000435941 1675 ntBASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 AC245100.2-201ENST00000454544 1679 ntBASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.88□□□□□ -1.47
HDDC3Q8N4P3 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 AC007342.5-201ENST00000571340 2142 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 IMMTP1-201ENST00000435590 2219 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 RNU6-1331P-201ENST00000363658 106 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 RNA5SP514-201ENST00000363717 111 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 RN7SKP124-201ENST00000364730 341 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms