Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ARHGAP42P4-201ENST00000549782 2934 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC6.56□□□□□ -1.36
RNF4P78317 NPHP1-201ENST00000316534 3756 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
RNF4P78317 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC6.55□□□□□ -1.36
RNF4P78317 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC6.55□□□□□ -1.36
RNF4P78317 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 OR9I1-203ENST00000641478 3027 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
RNF4P78317 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 KYNUP2-201ENST00000582280 1329 ntBASIC6.55□□□□□ -1.36
RNF4P78317 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
RNF4P78317 DDX18P6-201ENST00000450119 1997 ntBASIC6.55□□□□□ -1.36
RNF4P78317 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC6.55□□□□□ -1.36
RNF4P78317 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC6.55□□□□□ -1.36
RNF4P78317 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC6.55□□□□□ -1.36
RNF4P78317 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC6.55□□□□□ -1.36
RNF4P78317 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 RBM41-202ENST00000372487 2579 ntAPPRIS ALT1 TSL 2 BASIC6.55□□□□□ -1.36
RNF4P78317 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC6.55□□□□□ -1.36
RNF4P78317 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
RNF4P78317 RNA5SP429-201ENST00000363688 109 ntBASIC6.55□□□□□ -1.36
RNF4P78317 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 MIR138-2-201ENST00000384916 84 ntBASIC6.55□□□□□ -1.36
RNF4P78317 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC6.55□□□□□ -1.36
RNF4P78317 SUMO2P13-201ENST00000403109 272 ntBASIC6.55□□□□□ -1.36
RNF4P78317 RNA5SP280-201ENST00000411230 115 ntBASIC6.55□□□□□ -1.36
RNF4P78317 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC6.55□□□□□ -1.36
RNF4P78317 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC6.55□□□□□ -1.36
RNF4P78317 MEAF6P1-201ENST00000416092 327 ntBASIC6.55□□□□□ -1.36
RNF4P78317 AC073115.2-201ENST00000416708 555 ntTSL 4 BASIC6.55□□□□□ -1.36
RNF4P78317 RPL17P17-201ENST00000419491 557 ntBASIC6.55□□□□□ -1.36
RNF4P78317 GAPDHP69-201ENST00000425504 1008 ntBASIC6.55□□□□□ -1.36
RNF4P78317 CHCHD3P1-201ENST00000425516 676 ntBASIC6.55□□□□□ -1.36
RNF4P78317 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC6.55□□□□□ -1.36
RNF4P78317 AC009303.1-201ENST00000426307 352 ntBASIC6.55□□□□□ -1.36
RNF4P78317 CNOT7P1-201ENST00000429006 852 ntBASIC6.55□□□□□ -1.36
RNF4P78317 GCA-203ENST00000429691 824 ntTSL 3 BASIC6.55□□□□□ -1.36
RNF4P78317 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC6.55□□□□□ -1.36
RNF4P78317 CCNB1IP1P2-201ENST00000432876 818 ntBASIC6.55□□□□□ -1.36
RNF4P78317 USP9YP35-201ENST00000435696 412 ntBASIC6.55□□□□□ -1.36
RNF4P78317 GTF2IP7-202ENST00000436677 309 ntBASIC6.55□□□□□ -1.36
RNF4P78317 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC6.55□□□□□ -1.36
RNF4P78317 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC6.55□□□□□ -1.36
RNF4P78317 SDHCP3-201ENST00000445371 506 ntBASIC6.55□□□□□ -1.36
RNF4P78317 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC6.55□□□□□ -1.36
RNF4P78317 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC6.55□□□□□ -1.36
RNF4P78317 FAR2P1-206ENST00000449736 709 ntBASIC6.55□□□□□ -1.36
RNF4P78317 RPL5P32-201ENST00000454085 879 ntBASIC6.55□□□□□ -1.36
RNF4P78317 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC6.55□□□□□ -1.36
RNF4P78317 CFTRP1-201ENST00000456646 183 ntBASIC6.55□□□□□ -1.36
RNF4P78317 HSPE1P22-201ENST00000456856 327 ntBASIC6.55□□□□□ -1.36
RNF4P78317 AC002075.1-201ENST00000457396 676 ntBASIC6.55□□□□□ -1.36
RNF4P78317 AC079193.1-201ENST00000460497 588 ntBASIC6.55□□□□□ -1.36
RNF4P78317 RPS16P9-201ENST00000477220 427 ntBASIC6.55□□□□□ -1.36
RNF4P78317 ZNF525-204ENST00000491101 569 ntTSL 4 BASIC6.55□□□□□ -1.36
RNF4P78317 AC018639.1-201ENST00000492994 442 ntBASIC6.55□□□□□ -1.36
RNF4P78317 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC6.55□□□□□ -1.36
RNF4P78317 AC073358.1-201ENST00000505671 684 ntBASIC6.55□□□□□ -1.36
RNF4P78317 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC6.55□□□□□ -1.36
RNF4P78317 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC6.55□□□□□ -1.36
RNF4P78317 DCAF13P2-201ENST00000514188 555 ntBASIC6.55□□□□□ -1.36
RNF4P78317 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC6.55□□□□□ -1.36
RNF4P78317 AC106038.2-201ENST00000520706 568 ntBASIC6.55□□□□□ -1.36
RNF4P78317 AC090193.1-202ENST00000524355 566 ntTSL 4 BASIC6.55□□□□□ -1.36
RNF4P78317 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 LINC01559-203ENST00000531049 683 ntTSL 3 BASIC6.55□□□□□ -1.36
RNF4P78317 CASP1-216ENST00000534497 825 ntTSL 5 BASIC6.55□□□□□ -1.36
RNF4P78317 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC6.55□□□□□ -1.36
RNF4P78317 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.55□□□□□ -1.36
RNF4P78317 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC6.55□□□□□ -1.36
RNF4P78317 IDH3A-223ENST00000561366 389 ntTSL 3 BASIC6.55□□□□□ -1.36
RNF4P78317 NQO1-205ENST00000561500 891 ntTSL 3 BASIC6.55□□□□□ -1.36
RNF4P78317 AC108097.1-201ENST00000568275 534 ntTSL 4 BASIC6.55□□□□□ -1.36
RNF4P78317 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC6.55□□□□□ -1.36
RNF4P78317 FAM106CP-201ENST00000582212 507 ntBASIC6.55□□□□□ -1.36
RNF4P78317 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC6.55□□□□□ -1.36
RNF4P78317 ZNF675-204ENST00000599168 592 ntTSL 2 BASIC6.55□□□□□ -1.36
RNF4P78317 AC090181.2-201ENST00000602975 672 ntBASIC6.55□□□□□ -1.36
RNF4P78317 AC138749.5-201ENST00000611461 208 ntBASIC6.55□□□□□ -1.36
RNF4P78317 RN7SL126P-201ENST00000616400 299 ntBASIC6.55□□□□□ -1.36
RNF4P78317 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 BANCR-201ENST00000624238 473 ntTSL 2 BASIC6.55□□□□□ -1.36
RNF4P78317 AC019226.1-201ENST00000625666 515 ntBASIC6.55□□□□□ -1.36
RNF4P78317 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC6.55□□□□□ -1.36
RNF4P78317 LINC00466-206ENST00000634576 1279 ntTSL 5 BASIC6.55□□□□□ -1.36
RNF4P78317 AC006453.3-201ENST00000635891 377 ntBASIC6.55□□□□□ -1.36
RNF4P78317 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC6.55□□□□□ -1.36
RNF4P78317 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 CLUL1-201ENST00000338387 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 ZNF402P-201ENST00000404435 3100 ntBASIC6.55□□□□□ -1.36
RNF4P78317 NCOA4P3-201ENST00000513203 1877 ntBASIC6.55□□□□□ -1.36
RNF4P78317 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms