Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.95□□□□□ -1.62
CDX1P47902 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC4.95□□□□□ -1.62
CDX1P47902 RPS26P13-201ENST00000419030 330 ntBASIC4.95□□□□□ -1.62
CDX1P47902 AC016027.5-201ENST00000427227 210 ntBASIC4.95□□□□□ -1.62
CDX1P47902 AC108479.1-201ENST00000431142 427 ntBASIC4.95□□□□□ -1.62
CDX1P47902 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC4.95□□□□□ -1.62
CDX1P47902 MTND2P40-201ENST00000436718 841 ntBASIC4.95□□□□□ -1.62
CDX1P47902 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC4.95□□□□□ -1.62
CDX1P47902 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC4.95□□□□□ -1.62
CDX1P47902 AC015983.1-201ENST00000441577 373 ntBASIC4.95□□□□□ -1.62
CDX1P47902 AL645936.1-201ENST00000441979 518 ntBASIC4.95□□□□□ -1.62
CDX1P47902 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC4.95□□□□□ -1.62
CDX1P47902 AC010240.2-201ENST00000445363 1205 ntBASIC4.95□□□□□ -1.62
CDX1P47902 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC4.95□□□□□ -1.62
CDX1P47902 VN1R38P-201ENST00000450265 887 ntBASIC4.95□□□□□ -1.62
CDX1P47902 RN7SL254P-201ENST00000460609 284 ntBASIC4.95□□□□□ -1.62
CDX1P47902 RPS4XP12-201ENST00000461747 709 ntBASIC4.95□□□□□ -1.62
CDX1P47902 RPL12P31-201ENST00000478433 450 ntBASIC4.95□□□□□ -1.62
CDX1P47902 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC4.95□□□□□ -1.62
CDX1P47902 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
CDX1P47902 MTCO1P31-201ENST00000506355 492 ntBASIC4.95□□□□□ -1.62
CDX1P47902 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC4.95□□□□□ -1.62
CDX1P47902 AC010343.2-201ENST00000510162 224 ntBASIC4.95□□□□□ -1.62
CDX1P47902 AC018797.1-201ENST00000510791 255 ntBASIC4.95□□□□□ -1.62
CDX1P47902 APOBEC3AP1-201ENST00000511396 287 ntBASIC4.95□□□□□ -1.62
CDX1P47902 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.95□□□□□ -1.62
CDX1P47902 RNA5SP441-201ENST00000516809 88 ntBASIC4.95□□□□□ -1.62
CDX1P47902 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC4.95□□□□□ -1.62
CDX1P47902 AC009729.1-201ENST00000548873 1133 ntBASIC4.95□□□□□ -1.62
CDX1P47902 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC4.95□□□□□ -1.62
CDX1P47902 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC4.95□□□□□ -1.62
CDX1P47902 LINC00557-201ENST00000563184 1279 ntBASIC4.95□□□□□ -1.62
CDX1P47902 AC122134.1-201ENST00000565664 1104 ntBASIC4.95□□□□□ -1.62
CDX1P47902 AC073046.2-201ENST00000604756 527 ntBASIC4.95□□□□□ -1.62
CDX1P47902 AC073592.6-201ENST00000624271 415 ntBASIC4.95□□□□□ -1.62
CDX1P47902 AC006453.5-201ENST00000636451 619 ntBASIC4.95□□□□□ -1.62
CDX1P47902 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC4.95□□□□□ -1.62
CDX1P47902 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
CDX1P47902 KARSP1-201ENST00000451871 1752 ntBASIC4.95□□□□□ -1.62
CDX1P47902 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
CDX1P47902 AC007842.1-201ENST00000597336 2039 ntBASIC4.95□□□□□ -1.62
CDX1P47902 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CDX1P47902 PHACTR2P1-201ENST00000605639 1414 ntBASIC4.95□□□□□ -1.62
CDX1P47902 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
CDX1P47902 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
CDX1P47902 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
CDX1P47902 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
CDX1P47902 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC4.95□□□□□ -1.62
CDX1P47902 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
CDX1P47902 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CDX1P47902 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC4.94□□□□□ -1.62
CDX1P47902 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.94□□□□□ -1.62
CDX1P47902 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CDX1P47902 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CDX1P47902 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CDX1P47902 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CDX1P47902 OFD1P15Y-201ENST00000411536 1392 ntBASIC4.94□□□□□ -1.62
CDX1P47902 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
CDX1P47902 AP001029.2-203ENST00000589795 4910 ntBASIC4.94□□□□□ -1.62
CDX1P47902 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC4.94□□□□□ -1.62
CDX1P47902 MTCO1P15-201ENST00000529569 1526 ntBASIC4.94□□□□□ -1.62
CDX1P47902 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC4.94□□□□□ -1.62
CDX1P47902 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC4.94□□□□□ -1.62
CDX1P47902 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC4.94□□□□□ -1.62
CDX1P47902 U3.10-201ENST00000364459 214 ntBASIC4.94□□□□□ -1.62
CDX1P47902 SNORD115-48-201ENST00000364764 76 ntBASIC4.94□□□□□ -1.62
CDX1P47902 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.94□□□□□ -1.62
CDX1P47902 YWHAZP6-201ENST00000399764 738 ntBASIC4.94□□□□□ -1.62
CDX1P47902 HMGB3P7-201ENST00000400214 611 ntBASIC4.94□□□□□ -1.62
CDX1P47902 AL356057.1-202ENST00000402263 756 ntBASIC4.94□□□□□ -1.62
CDX1P47902 RPL5P19-201ENST00000404228 893 ntBASIC4.94□□□□□ -1.62
CDX1P47902 UBE2V1P15-201ENST00000407776 448 ntBASIC4.94□□□□□ -1.62
CDX1P47902 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC4.94□□□□□ -1.62
CDX1P47902 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC4.94□□□□□ -1.62
CDX1P47902 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC4.94□□□□□ -1.62
CDX1P47902 AC079809.1-201ENST00000415468 276 ntBASIC4.94□□□□□ -1.62
CDX1P47902 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC4.94□□□□□ -1.62
CDX1P47902 AL136231.1-201ENST00000429407 730 ntBASIC4.94□□□□□ -1.62
CDX1P47902 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CDX1P47902 USP24P1-201ENST00000433802 779 ntBASIC4.94□□□□□ -1.62
CDX1P47902 AC099670.2-201ENST00000435130 321 ntBASIC4.94□□□□□ -1.62
CDX1P47902 GAPDHP59-201ENST00000435908 267 ntBASIC4.94□□□□□ -1.62
CDX1P47902 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.94□□□□□ -1.62
CDX1P47902 MTND4P15-201ENST00000437913 1033 ntBASIC4.94□□□□□ -1.62
CDX1P47902 SCAND3P1-201ENST00000439854 1060 ntBASIC4.94□□□□□ -1.62
CDX1P47902 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC4.94□□□□□ -1.62
CDX1P47902 CXCR2P1-202ENST00000443392 1074 ntBASIC4.94□□□□□ -1.62
CDX1P47902 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC4.94□□□□□ -1.62
CDX1P47902 HMGB1P7-201ENST00000450921 612 ntBASIC4.94□□□□□ -1.62
CDX1P47902 CALM1P2-201ENST00000452941 448 ntBASIC4.94□□□□□ -1.62
CDX1P47902 RPL12P24-201ENST00000474907 486 ntBASIC4.94□□□□□ -1.62
CDX1P47902 RN7SL369P-201ENST00000477138 299 ntBASIC4.94□□□□□ -1.62
CDX1P47902 AC117394.1-201ENST00000477323 567 ntBASIC4.94□□□□□ -1.62
CDX1P47902 RN7SL714P-201ENST00000487050 298 ntBASIC4.94□□□□□ -1.62
CDX1P47902 RN7SL170P-201ENST00000487098 295 ntBASIC4.94□□□□□ -1.62
CDX1P47902 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.94□□□□□ -1.62
CDX1P47902 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC4.94□□□□□ -1.62
CDX1P47902 SETP12-201ENST00000514068 805 ntBASIC4.94□□□□□ -1.62
CDX1P47902 RNA5SP230-201ENST00000517039 122 ntBASIC4.94□□□□□ -1.62
CDX1P47902 IGHV3-63-201ENST00000518422 341 ntBASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms