Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
HNF4AP41235 CXADRP1-201ENST00000398098 1095 ntBASIC5.71□□□□□ -1.5
HNF4AP41235 RPL35AP3-201ENST00000414680 288 ntBASIC5.71□□□□□ -1.5
HNF4AP41235 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HNF4AP41235 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.71□□□□□ -1.5
HNF4AP41235 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HNF4AP41235 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.71□□□□□ -1.5
HNF4AP41235 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
HNF4AP41235 AC096775.1-201ENST00000437724 448 ntBASIC5.71□□□□□ -1.5
HNF4AP41235 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC5.71□□□□□ -1.5
HNF4AP41235 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC5.71□□□□□ -1.5
HNF4AP41235 RSU1P1-201ENST00000453416 441 ntBASIC5.71□□□□□ -1.5
HNF4AP41235 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC5.71□□□□□ -1.5
HNF4AP41235 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.71□□□□□ -1.5
HNF4AP41235 AC090424.1-201ENST00000535243 736 ntBASIC5.71□□□□□ -1.5
HNF4AP41235 AC079905.1-201ENST00000549280 475 ntBASIC5.71□□□□□ -1.5
HNF4AP41235 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.71□□□□□ -1.5
HNF4AP41235 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.71□□□□□ -1.5
HNF4AP41235 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.71□□□□□ -1.5
HNF4AP41235 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.71□□□□□ -1.5
HNF4AP41235 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HNF4AP41235 CXADRP3-202ENST00000617265 1100 ntBASIC5.71□□□□□ -1.5
HNF4AP41235 RNA5SP439-201ENST00000617595 124 ntBASIC5.71□□□□□ -1.5
HNF4AP41235 AL136228.1-201ENST00000622221 319 ntBASIC5.71□□□□□ -1.5
HNF4AP41235 AC105105.5-201ENST00000622635 1294 ntBASIC5.71□□□□□ -1.5
HNF4AP41235 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC5.71□□□□□ -1.5
HNF4AP41235 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HNF4AP41235 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
HNF4AP41235 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HNF4AP41235 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HNF4AP41235 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.71□□□□□ -1.5
HNF4AP41235 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.71□□□□□ -1.5
HNF4AP41235 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HNF4AP41235 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.71□□□□□ -1.5
HNF4AP41235 AC006484.1-201ENST00000435086 1884 ntBASIC5.71□□□□□ -1.5
HNF4AP41235 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HNF4AP41235 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HNF4AP41235 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HNF4AP41235 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.7□□□□□ -1.5
HNF4AP41235 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.7□□□□□ -1.5
HNF4AP41235 QRSL1P1-201ENST00000400977 1540 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HNF4AP41235 RNFT1P3-201ENST00000340898 1052 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
HNF4AP41235 MIR133A2-201ENST00000347538 102 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 RNA5SP433-201ENST00000364491 114 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 AC004386.1-201ENST00000393214 761 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HNF4AP41235 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.7□□□□□ -1.5
HNF4AP41235 RPS4XP5-201ENST00000419038 768 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.7□□□□□ -1.5
HNF4AP41235 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC5.7□□□□□ -1.5
HNF4AP41235 KIF4CP-201ENST00000422742 1279 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 AC093084.1-201ENST00000424233 687 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 HMGB1P32-201ENST00000425971 565 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 BMS1P10-201ENST00000443754 1120 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.7□□□□□ -1.5
HNF4AP41235 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
HNF4AP41235 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC5.7□□□□□ -1.5
HNF4AP41235 PPIAP27-201ENST00000453800 265 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 RN7SL269P-201ENST00000467795 305 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC5.7□□□□□ -1.5
HNF4AP41235 RPL7AP10-201ENST00000481016 791 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 RPL38P3-201ENST00000484463 213 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC5.7□□□□□ -1.5
HNF4AP41235 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC5.7□□□□□ -1.5
HNF4AP41235 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.7□□□□□ -1.5
HNF4AP41235 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC5.7□□□□□ -1.5
HNF4AP41235 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.7□□□□□ -1.5
HNF4AP41235 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC5.7□□□□□ -1.5
HNF4AP41235 AC117525.1-201ENST00000515228 503 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC5.7□□□□□ -1.5
HNF4AP41235 AC078899.1-201ENST00000521432 1185 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 AC109635.6-201ENST00000525487 1113 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 AC027369.2-201ENST00000528030 440 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HNF4AP41235 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.7□□□□□ -1.5
HNF4AP41235 EIF1AXP2-201ENST00000555940 413 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.7□□□□□ -1.5
HNF4AP41235 CD24P2-201ENST00000565486 219 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC5.7□□□□□ -1.5
HNF4AP41235 AP001357.1-201ENST00000586304 1053 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC5.7□□□□□ -1.5
HNF4AP41235 AC145423.1-201ENST00000605712 336 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 AL136131.3-201ENST00000607600 188 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.7□□□□□ -1.5
HNF4AP41235 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.7□□□□□ -1.5
HNF4AP41235 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.7□□□□□ -1.5
HNF4AP41235 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.7□□□□□ -1.5
HNF4AP41235 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.7□□□□□ -1.5
HNF4AP41235 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
HNF4AP41235 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HNF4AP41235 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HNF4AP41235 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HNF4AP41235 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HNF4AP41235 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.7□□□□□ -1.5
HNF4AP41235 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.7□□□□□ -1.5
HNF4AP41235 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HNF4AP41235 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
HNF4AP41235 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms