Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CDY17P-201ENST00000414121 1282 ntBASIC5.38□□□□□ -1.55
SOX3P41225 RANP7-201ENST00000418085 644 ntBASIC5.38□□□□□ -1.55
SOX3P41225 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.38□□□□□ -1.55
SOX3P41225 BX119321.1-201ENST00000428912 797 ntBASIC5.38□□□□□ -1.55
SOX3P41225 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
SOX3P41225 MTND2P40-201ENST00000436718 841 ntBASIC5.38□□□□□ -1.55
SOX3P41225 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC5.38□□□□□ -1.55
SOX3P41225 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.38□□□□□ -1.55
SOX3P41225 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.38□□□□□ -1.55
SOX3P41225 RPL36AP39-201ENST00000445859 318 ntBASIC5.38□□□□□ -1.55
SOX3P41225 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.38□□□□□ -1.55
SOX3P41225 RSU1P1-201ENST00000453416 441 ntBASIC5.38□□□□□ -1.55
SOX3P41225 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC5.38□□□□□ -1.55
SOX3P41225 RPL12P39-201ENST00000455456 496 ntBASIC5.38□□□□□ -1.55
SOX3P41225 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC5.38□□□□□ -1.55
SOX3P41225 NENFP3-201ENST00000503735 313 ntBASIC5.38□□□□□ -1.55
SOX3P41225 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.38□□□□□ -1.55
SOX3P41225 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.38□□□□□ -1.55
SOX3P41225 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC5.38□□□□□ -1.55
SOX3P41225 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC5.38□□□□□ -1.55
SOX3P41225 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
SOX3P41225 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.38□□□□□ -1.55
SOX3P41225 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
SOX3P41225 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.38□□□□□ -1.55
SOX3P41225 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.38□□□□□ -1.55
SOX3P41225 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
SOX3P41225 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SOX3P41225 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
SOX3P41225 AC093671.1-201ENST00000624981 2929 ntBASIC5.38□□□□□ -1.55
SOX3P41225 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.38□□□□□ -1.55
SOX3P41225 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC5.38□□□□□ -1.55
SOX3P41225 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.38□□□□□ -1.55
SOX3P41225 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SOX3P41225 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SOX3P41225 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SOX3P41225 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SOX3P41225 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SOX3P41225 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.37□□□□□ -1.55
SOX3P41225 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SOX3P41225 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SOX3P41225 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SOX3P41225 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SOX3P41225 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
SOX3P41225 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SOX3P41225 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SOX3P41225 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
SOX3P41225 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.37□□□□□ -1.55
SOX3P41225 SNORA17A-201ENST00000391185 133 ntBASIC5.37□□□□□ -1.55
SOX3P41225 AL158827.1-201ENST00000416300 391 ntBASIC5.37□□□□□ -1.55
SOX3P41225 AC127526.2-201ENST00000426436 775 ntBASIC5.37□□□□□ -1.55
SOX3P41225 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.37□□□□□ -1.55
SOX3P41225 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
SOX3P41225 AL161636.2-201ENST00000445179 927 ntBASIC5.37□□□□□ -1.55
SOX3P41225 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.37□□□□□ -1.55
SOX3P41225 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.37□□□□□ -1.55
SOX3P41225 NXT1P1-201ENST00000458481 316 ntBASIC5.37□□□□□ -1.55
SOX3P41225 AC111000.6-201ENST00000514471 709 ntBASIC5.37□□□□□ -1.55
SOX3P41225 MIR2117-201ENST00000516780 80 ntBASIC5.37□□□□□ -1.55
SOX3P41225 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC5.37□□□□□ -1.55
SOX3P41225 MTND2P7-201ENST00000521337 640 ntBASIC5.37□□□□□ -1.55
SOX3P41225 AC112191.2-201ENST00000522428 333 ntBASIC5.37□□□□□ -1.55
SOX3P41225 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.37□□□□□ -1.55
SOX3P41225 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC5.37□□□□□ -1.55
SOX3P41225 AC126615.2-201ENST00000553003 515 ntBASIC5.37□□□□□ -1.55
SOX3P41225 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.37□□□□□ -1.55
SOX3P41225 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.37□□□□□ -1.55
SOX3P41225 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC5.37□□□□□ -1.55
SOX3P41225 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.37□□□□□ -1.55
SOX3P41225 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.37□□□□□ -1.55
SOX3P41225 AL133406.3-201ENST00000606817 541 ntBASIC5.37□□□□□ -1.55
SOX3P41225 AC016911.1-201ENST00000613297 452 ntBASIC5.37□□□□□ -1.55
SOX3P41225 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.37□□□□□ -1.55
SOX3P41225 REV3L-214ENST00000619481 969 ntTSL 5 BASIC5.37□□□□□ -1.55
SOX3P41225 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.37□□□□□ -1.55
SOX3P41225 SNORA17.5-201ENST00000630429 132 ntBASIC5.37□□□□□ -1.55
SOX3P41225 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.37□□□□□ -1.55
SOX3P41225 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.37□□□□□ -1.55
SOX3P41225 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.37□□□□□ -1.55
SOX3P41225 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SOX3P41225 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.37□□□□□ -1.55
SOX3P41225 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SOX3P41225 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SOX3P41225 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SOX3P41225 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.37□□□□□ -1.55
SOX3P41225 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SOX3P41225 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SOX3P41225 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
SOX3P41225 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SOX3P41225 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.36□□□□□ -1.55
SOX3P41225 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SOX3P41225 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SOX3P41225 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.36□□□□□ -1.55
SOX3P41225 AL137058.3-201ENST00000624531 3099 ntBASIC5.36□□□□□ -1.55
SOX3P41225 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SOX3P41225 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SOX3P41225 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SOX3P41225 RN7SKP69-201ENST00000365390 305 ntBASIC5.36□□□□□ -1.55
SOX3P41225 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SOX3P41225 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SOX3P41225 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms