Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SCN4AP35499 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SCN4AP35499 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SCN4AP35499 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SCN4AP35499 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SCN4AP35499 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SCN4AP35499 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC6.59□□□□□ -1.35
SCN4AP35499 CPS1-IT1-201ENST00000628368 2306 ntBASIC6.59□□□□□ -1.35
SCN4AP35499 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
SCN4AP35499 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
SCN4AP35499 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SCN4AP35499 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC6.59□□□□□ -1.35
SCN4AP35499 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SCN4AP35499 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SCN4AP35499 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SCN4AP35499 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
SCN4AP35499 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC6.59□□□□□ -1.35
SCN4AP35499 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
SCN4AP35499 CDC123-202ENST00000378900 933 ntTSL 5 BASIC6.59□□□□□ -1.35
SCN4AP35499 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SCN4AP35499 AC093655.2-201ENST00000425735 631 ntBASIC6.59□□□□□ -1.35
SCN4AP35499 GAPDHP25-201ENST00000447061 1001 ntBASIC6.59□□□□□ -1.35
SCN4AP35499 AC092647.2-201ENST00000452998 253 ntBASIC6.59□□□□□ -1.35
SCN4AP35499 RN7SL817P-201ENST00000480777 288 ntBASIC6.59□□□□□ -1.35
SCN4AP35499 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SCN4AP35499 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC6.59□□□□□ -1.35
SCN4AP35499 AC004980.4-201ENST00000513375 203 ntBASIC6.59□□□□□ -1.35
SCN4AP35499 AC020937.1-201ENST00000519677 1013 ntBASIC6.59□□□□□ -1.35
SCN4AP35499 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.59□□□□□ -1.35
SCN4AP35499 AC009117.1-201ENST00000563948 554 ntBASIC6.59□□□□□ -1.35
SCN4AP35499 AC021422.1-201ENST00000621212 473 ntBASIC6.59□□□□□ -1.35
SCN4AP35499 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SCN4AP35499 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.59□□□□□ -1.35
SCN4AP35499 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
SCN4AP35499 AL034549.2-201ENST00000618285 3373 ntBASIC6.59□□□□□ -1.35
SCN4AP35499 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
SCN4AP35499 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.36
SCN4AP35499 SPATA31C1-201ENST00000420021 3895 ntBASIC6.59□□□□□ -1.36
SCN4AP35499 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
SCN4AP35499 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC6.59□□□□□ -1.36
SCN4AP35499 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.59□□□□□ -1.36
SCN4AP35499 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SCN4AP35499 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC6.58□□□□□ -1.36
SCN4AP35499 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC6.58□□□□□ -1.36
SCN4AP35499 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
SCN4AP35499 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
SCN4AP35499 RPS16P5-201ENST00000406501 404 ntBASIC6.58□□□□□ -1.36
SCN4AP35499 OR4K12P-201ENST00000406538 961 ntBASIC6.58□□□□□ -1.36
SCN4AP35499 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC6.58□□□□□ -1.36
SCN4AP35499 C1GALT1P3-201ENST00000522049 819 ntBASIC6.58□□□□□ -1.36
SCN4AP35499 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC6.58□□□□□ -1.36
SCN4AP35499 EDDM3DP-201ENST00000554692 434 ntBASIC6.58□□□□□ -1.36
SCN4AP35499 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC6.58□□□□□ -1.36
SCN4AP35499 EIF3FP1-201ENST00000613970 806 ntBASIC6.58□□□□□ -1.36
SCN4AP35499 AC073575.2-201ENST00000614212 627 ntBASIC6.58□□□□□ -1.36
SCN4AP35499 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SCN4AP35499 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SCN4AP35499 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SCN4AP35499 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
SCN4AP35499 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.58□□□□□ -1.36
SCN4AP35499 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC6.58□□□□□ -1.36
SCN4AP35499 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC6.58□□□□□ -1.36
SCN4AP35499 LINC01616-201ENST00000561816 2280 ntBASIC6.58□□□□□ -1.36
SCN4AP35499 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
SCN4AP35499 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SCN4AP35499 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SCN4AP35499 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
SCN4AP35499 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC6.57□□□□□ -1.36
SCN4AP35499 RPL7P58-201ENST00000402913 758 ntBASIC6.57□□□□□ -1.36
SCN4AP35499 AC019050.1-201ENST00000418508 492 ntBASIC6.57□□□□□ -1.36
SCN4AP35499 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC6.57□□□□□ -1.36
SCN4AP35499 AC097484.1-201ENST00000471148 389 ntBASIC6.57□□□□□ -1.36
SCN4AP35499 DUTP1-201ENST00000493631 470 ntBASIC6.57□□□□□ -1.36
SCN4AP35499 RNA5SP116-201ENST00000516132 98 ntBASIC6.57□□□□□ -1.36
SCN4AP35499 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC6.57□□□□□ -1.36
SCN4AP35499 AC024589.2-201ENST00000605642 1294 ntBASIC6.57□□□□□ -1.36
SCN4AP35499 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC6.57□□□□□ -1.36
SCN4AP35499 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC6.57□□□□□ -1.36
SCN4AP35499 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SCN4AP35499 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC6.57□□□□□ -1.36
SCN4AP35499 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC6.57□□□□□ -1.36
SCN4AP35499 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC6.57□□□□□ -1.36
SCN4AP35499 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SCN4AP35499 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
SCN4AP35499 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SCN4AP35499 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SCN4AP35499 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SCN4AP35499 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC6.57□□□□□ -1.36
SCN4AP35499 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SCN4AP35499 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC6.57□□□□□ -1.36
SCN4AP35499 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SCN4AP35499 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC6.57□□□□□ -1.36
SCN4AP35499 DDX39BP1-205ENST00000422507 192 ntBASIC6.57□□□□□ -1.36
SCN4AP35499 AC007568.1-201ENST00000422912 471 ntBASIC6.57□□□□□ -1.36
SCN4AP35499 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC6.57□□□□□ -1.36
SCN4AP35499 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC6.57□□□□□ -1.36
SCN4AP35499 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC6.57□□□□□ -1.36
SCN4AP35499 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC6.57□□□□□ -1.36
SCN4AP35499 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC6.57□□□□□ -1.36
SCN4AP35499 AC021006.3-201ENST00000530771 192 ntBASIC6.57□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 131.4 ms