Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RNA5SP500-201ENST00000364486 119 ntBASIC4.93□□□□□ -1.62
USF1P22415 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
USF1P22415 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC4.93□□□□□ -1.62
USF1P22415 RN7SKP278-201ENST00000410504 342 ntBASIC4.93□□□□□ -1.62
USF1P22415 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC4.93□□□□□ -1.62
USF1P22415 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC4.93□□□□□ -1.62
USF1P22415 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC4.93□□□□□ -1.62
USF1P22415 AC127526.2-201ENST00000426436 775 ntBASIC4.93□□□□□ -1.62
USF1P22415 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC4.93□□□□□ -1.62
USF1P22415 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC4.93□□□□□ -1.62
USF1P22415 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC4.93□□□□□ -1.62
USF1P22415 Z84478.1-201ENST00000438230 1219 ntBASIC4.93□□□□□ -1.62
USF1P22415 RPSAP41-201ENST00000439695 860 ntBASIC4.93□□□□□ -1.62
USF1P22415 AC073909.1-201ENST00000447112 999 ntBASIC4.93□□□□□ -1.62
USF1P22415 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC4.93□□□□□ -1.62
USF1P22415 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC4.93□□□□□ -1.62
USF1P22415 AC022215.1-201ENST00000481770 362 ntBASIC4.93□□□□□ -1.62
USF1P22415 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC4.93□□□□□ -1.62
USF1P22415 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC4.93□□□□□ -1.62
USF1P22415 TPM3P3-201ENST00000521343 354 ntBASIC4.93□□□□□ -1.62
USF1P22415 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC4.93□□□□□ -1.62
USF1P22415 MIR4260-201ENST00000583107 67 ntBASIC4.93□□□□□ -1.62
USF1P22415 MIR132-201ENST00000591554 101 ntBASIC4.93□□□□□ -1.62
USF1P22415 OR7E18P-201ENST00000592589 702 ntBASIC4.93□□□□□ -1.62
USF1P22415 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC4.93□□□□□ -1.62
USF1P22415 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC4.93□□□□□ -1.62
USF1P22415 AC016252.1-201ENST00000609721 474 ntBASIC4.93□□□□□ -1.62
USF1P22415 AC079395.2-201ENST00000610982 737 ntBASIC4.93□□□□□ -1.62
USF1P22415 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
USF1P22415 MVP-219ENST00000629059 120 ntTSL 5 BASIC4.93□□□□□ -1.62
USF1P22415 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
USF1P22415 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
USF1P22415 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
USF1P22415 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
USF1P22415 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
USF1P22415 FGG-205ENST00000407946 1636 ntTSL 5 BASIC4.93□□□□□ -1.62
USF1P22415 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC4.93□□□□□ -1.62
USF1P22415 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
USF1P22415 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
USF1P22415 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
USF1P22415 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC4.93□□□□□ -1.62
USF1P22415 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
USF1P22415 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC4.92□□□□□ -1.62
USF1P22415 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
USF1P22415 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
USF1P22415 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.92□□□□□ -1.62
USF1P22415 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC4.92□□□□□ -1.62
USF1P22415 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
USF1P22415 AC087516.1-201ENST00000561236 2428 ntBASIC4.92□□□□□ -1.62
USF1P22415 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC4.92□□□□□ -1.62
USF1P22415 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
USF1P22415 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
USF1P22415 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USF1P22415 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
USF1P22415 PEX12P1-201ENST00000400284 1048 ntBASIC4.92□□□□□ -1.62
USF1P22415 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
USF1P22415 BMS1P17-202ENST00000416720 316 ntBASIC4.92□□□□□ -1.62
USF1P22415 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC4.92□□□□□ -1.62
USF1P22415 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC4.92□□□□□ -1.62
USF1P22415 AL355433.1-201ENST00000422804 300 ntBASIC4.92□□□□□ -1.62
USF1P22415 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC4.92□□□□□ -1.62
USF1P22415 AC099677.3-201ENST00000427081 395 ntBASIC4.92□□□□□ -1.62
USF1P22415 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.92□□□□□ -1.62
USF1P22415 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC4.92□□□□□ -1.62
USF1P22415 RPL23AP40-201ENST00000487630 390 ntBASIC4.92□□□□□ -1.62
USF1P22415 AC112184.1-201ENST00000505179 312 ntBASIC4.92□□□□□ -1.62
USF1P22415 GOLGA5P1-201ENST00000507317 980 ntBASIC4.92□□□□□ -1.62
USF1P22415 AC138866.2-201ENST00000508650 584 ntBASIC4.92□□□□□ -1.62
USF1P22415 BX510359.5-201ENST00000515651 304 ntBASIC4.92□□□□□ -1.62
USF1P22415 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC4.92□□□□□ -1.62
USF1P22415 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC4.92□□□□□ -1.62
USF1P22415 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC4.92□□□□□ -1.62
USF1P22415 OR4A42P-201ENST00000531397 938 ntBASIC4.92□□□□□ -1.62
USF1P22415 AL049872.1-201ENST00000556323 322 ntBASIC4.92□□□□□ -1.62
USF1P22415 AL049779.3-201ENST00000557141 606 ntBASIC4.92□□□□□ -1.62
USF1P22415 AC119403.2-201ENST00000590960 598 ntBASIC4.92□□□□□ -1.62
USF1P22415 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
USF1P22415 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USF1P22415 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USF1P22415 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USF1P22415 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
USF1P22415 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
USF1P22415 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
USF1P22415 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
USF1P22415 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
USF1P22415 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
USF1P22415 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC4.91□□□□□ -1.62
USF1P22415 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
USF1P22415 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
USF1P22415 AC025470.1-201ENST00000510053 2032 ntBASIC4.91□□□□□ -1.62
USF1P22415 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
USF1P22415 MIR105-2-201ENST00000385083 81 ntBASIC4.91□□□□□ -1.62
USF1P22415 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
USF1P22415 RN7SKP166-201ENST00000410812 305 ntBASIC4.91□□□□□ -1.62
USF1P22415 MRPL53P1-201ENST00000414323 319 ntBASIC4.91□□□□□ -1.62
USF1P22415 RPS4XP5-201ENST00000419038 768 ntBASIC4.91□□□□□ -1.62
USF1P22415 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC4.91□□□□□ -1.62
USF1P22415 TNPO1P1-201ENST00000423641 1138 ntBASIC4.91□□□□□ -1.62
USF1P22415 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC4.91□□□□□ -1.62
USF1P22415 AL662874.1-201ENST00000426065 230 ntBASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms