Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
HMGB1P09429 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
HMGB1P09429 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.22
HMGB1P09429 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
HMGB1P09429 AL359091.1-201ENST00000449048 1734 ntBASIC7.4□□□□□ -1.23
HMGB1P09429 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
HMGB1P09429 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
HMGB1P09429 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC7.4□□□□□ -1.23
HMGB1P09429 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.23
HMGB1P09429 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.23
HMGB1P09429 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
HMGB1P09429 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
HMGB1P09429 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
HMGB1P09429 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
HMGB1P09429 MRE11P1-201ENST00000464884 2127 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 AC083843.2-201ENST00000568248 6253 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 AL078621.3-201ENST00000623707 2042 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
HMGB1P09429 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
HMGB1P09429 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC7.39□□□□□ -1.23
HMGB1P09429 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
HMGB1P09429 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
HMGB1P09429 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
HMGB1P09429 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
HMGB1P09429 SNORA64.3-201ENST00000365647 134 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
HMGB1P09429 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
HMGB1P09429 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC7.39□□□□□ -1.23
HMGB1P09429 AC004012.1-201ENST00000416593 534 ntTSL 4 BASIC7.39□□□□□ -1.23
HMGB1P09429 OSTCP4-201ENST00000424397 449 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC7.39□□□□□ -1.23
HMGB1P09429 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC7.39□□□□□ -1.23
HMGB1P09429 NPM1P22-201ENST00000427761 952 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC7.39□□□□□ -1.23
HMGB1P09429 AC097499.1-201ENST00000444277 208 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC7.39□□□□□ -1.23
HMGB1P09429 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC7.39□□□□□ -1.23
HMGB1P09429 RPL7L1P1-201ENST00000448259 785 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
HMGB1P09429 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
HMGB1P09429 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC7.39□□□□□ -1.23
HMGB1P09429 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC7.39□□□□□ -1.23
HMGB1P09429 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC7.39□□□□□ -1.23
HMGB1P09429 SMARCE1P4-201ENST00000523647 241 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC7.39□□□□□ -1.23
HMGB1P09429 CIR1P1-201ENST00000524055 1133 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 AC139697.1-201ENST00000548429 745 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC7.39□□□□□ -1.23
HMGB1P09429 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC7.39□□□□□ -1.23
HMGB1P09429 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC7.39□□□□□ -1.23
HMGB1P09429 CYCSP38-201ENST00000559840 322 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 AC090651.1-201ENST00000567865 634 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC7.39□□□□□ -1.23
HMGB1P09429 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC7.39□□□□□ -1.23
HMGB1P09429 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC7.39□□□□□ -1.23
HMGB1P09429 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC7.39□□□□□ -1.23
HMGB1P09429 AC005520.3-201ENST00000602874 370 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 AC011891.2-201ENST00000604949 397 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC7.39□□□□□ -1.23
HMGB1P09429 AC073592.7-201ENST00000623659 507 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 AC129915.3-201ENST00000634128 948 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC7.39□□□□□ -1.23
HMGB1P09429 OR2L1P-202ENST00000641567 1023 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
HMGB1P09429 AL359976.1-201ENST00000418655 3528 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
HMGB1P09429 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC7.39□□□□□ -1.23
HMGB1P09429 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
HMGB1P09429 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
HMGB1P09429 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
HMGB1P09429 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
HMGB1P09429 LINC01613-201ENST00000561476 2780 ntBASIC7.39□□□□□ -1.23
HMGB1P09429 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
HMGB1P09429 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
HMGB1P09429 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC7.38□□□□□ -1.23
HMGB1P09429 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC7.38□□□□□ -1.23
HMGB1P09429 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
HMGB1P09429 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC7.38□□□□□ -1.23
HMGB1P09429 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
HMGB1P09429 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC7.38□□□□□ -1.23
HMGB1P09429 BTBD10P1-201ENST00000549824 1352 ntBASIC7.38□□□□□ -1.23
HMGB1P09429 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
HMGB1P09429 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC7.38□□□□□ -1.23
HMGB1P09429 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC7.38□□□□□ -1.23
HMGB1P09429 RNU1-49P-201ENST00000363468 159 ntBASIC7.38□□□□□ -1.23
HMGB1P09429 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
HMGB1P09429 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
HMGB1P09429 RN7SKP151-201ENST00000410230 316 ntBASIC7.38□□□□□ -1.23
HMGB1P09429 MTND4P11-201ENST00000417020 1058 ntBASIC7.38□□□□□ -1.23
HMGB1P09429 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC7.38□□□□□ -1.23
HMGB1P09429 AC010086.1-201ENST00000437359 1052 ntBASIC7.38□□□□□ -1.23
HMGB1P09429 PPIAP10-201ENST00000438675 458 ntBASIC7.38□□□□□ -1.23
HMGB1P09429 ARMC4P1-201ENST00000438905 707 ntBASIC7.38□□□□□ -1.23
HMGB1P09429 ELOCP3-201ENST00000439303 348 ntBASIC7.38□□□□□ -1.23
HMGB1P09429 AC092601.1-201ENST00000444526 383 ntBASIC7.38□□□□□ -1.23
HMGB1P09429 GEMIN8P3-201ENST00000445417 720 ntBASIC7.38□□□□□ -1.23
HMGB1P09429 SUMO2P1-206ENST00000445436 284 ntBASIC7.38□□□□□ -1.23
HMGB1P09429 AC234771.2-201ENST00000445718 597 ntBASIC7.38□□□□□ -1.23
HMGB1P09429 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC7.38□□□□□ -1.23
HMGB1P09429 AC099670.1-201ENST00000455141 783 ntBASIC7.38□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms