Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.33□□□□□ -1.56
HOXD4P09016 AC103563.5-201ENST00000455643 364 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 AC073594.1-201ENST00000462065 364 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC5.33□□□□□ -1.56
HOXD4P09016 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 TPM3P3-201ENST00000521343 354 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 TRAV11-201ENST00000539512 339 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.33□□□□□ -1.56
HOXD4P09016 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXD4P09016 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXD4P09016 AC006530.1-201ENST00000555980 571 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXD4P09016 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.33□□□□□ -1.56
HOXD4P09016 AC009852.2-201ENST00000567898 485 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXD4P09016 AC010547.6-201ENST00000571789 193 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 AP005901.4-201ENST00000577336 569 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 AC115989.2-201ENST00000578640 563 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 MIR4489-201ENST00000578869 62 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXD4P09016 AL022394.1-201ENST00000606979 292 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 AC069234.4-201ENST00000621276 412 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.33□□□□□ -1.56
HOXD4P09016 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HOXD4P09016 AL034546.1-201ENST00000623740 3693 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
HOXD4P09016 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.33□□□□□ -1.56
HOXD4P09016 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXD4P09016 AL132656.3-201ENST00000606384 1595 ntBASIC5.33□□□□□ -1.56
HOXD4P09016 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
HOXD4P09016 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
HOXD4P09016 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXD4P09016 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HOXD4P09016 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXD4P09016 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
HOXD4P09016 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HOXD4P09016 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HOXD4P09016 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXD4P09016 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HOXD4P09016 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXD4P09016 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXD4P09016 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
HOXD4P09016 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXD4P09016 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXD4P09016 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
HOXD4P09016 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
HOXD4P09016 OR3A2-201ENST00000408891 1076 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 RN7SKP278-201ENST00000410504 342 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HOXD4P09016 OR2AT2P-201ENST00000413438 905 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 PTCD2P2-201ENST00000415579 1095 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.32□□□□□ -1.56
HOXD4P09016 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXD4P09016 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
HOXD4P09016 CLUHP1-201ENST00000435012 1190 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 AL445928.1-201ENST00000435545 222 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXD4P09016 MTND4LP12-201ENST00000448237 295 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 LRRC37A14P-201ENST00000452297 462 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 RPS27AP3-201ENST00000453803 454 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 AC104164.1-201ENST00000460282 590 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 TSACC-207ENST00000470342 601 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXD4P09016 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.32□□□□□ -1.56
HOXD4P09016 CCDC11P1-201ENST00000503137 1162 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 NENFP3-201ENST00000503735 313 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 AC008629.2-201ENST00000503783 483 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 AC002456.2-201ENST00000509356 380 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 HMGN2P36-201ENST00000529541 409 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 AC027216.1-201ENST00000577726 685 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 OR7E18P-201ENST00000592589 702 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXD4P09016 AL589674.2-201ENST00000604304 337 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 AL354950.1-201ENST00000614150 568 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 AC132825.8-201ENST00000640783 297 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 MIR193BHG-214ENST00000641765 509 ntBASIC5.32□□□□□ -1.56
HOXD4P09016 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXD4P09016 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXD4P09016 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXD4P09016 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXD4P09016 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXD4P09016 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXD4P09016 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXD4P09016 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXD4P09016 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXD4P09016 THAP12P9-201ENST00000503971 2360 ntBASIC5.31□□□□□ -1.56
HOXD4P09016 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXD4P09016 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.31□□□□□ -1.56
HOXD4P09016 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXD4P09016 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXD4P09016 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXD4P09016 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
HOXD4P09016 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC5.31□□□□□ -1.56
HOXD4P09016 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXD4P09016 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC5.31□□□□□ -1.56
HOXD4P09016 CCL7-202ENST00000394627 696 ntTSL 3 BASIC5.31□□□□□ -1.56
HOXD4P09016 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
HOXD4P09016 RN7SKP151-201ENST00000410230 316 ntBASIC5.31□□□□□ -1.56
HOXD4P09016 AL158827.1-201ENST00000416300 391 ntBASIC5.31□□□□□ -1.56
HOXD4P09016 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 134.9 ms