Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 RNA5SP439-201ENST00000617595 124 ntBASIC5.44□□□□□ -1.54
CLDN9O95484 MIR6778-201ENST00000617912 73 ntBASIC5.44□□□□□ -1.54
CLDN9O95484 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.44□□□□□ -1.54
CLDN9O95484 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.44□□□□□ -1.54
CLDN9O95484 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.44□□□□□ -1.54
CLDN9O95484 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
CLDN9O95484 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
CLDN9O95484 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.44□□□□□ -1.54
CLDN9O95484 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CLDN9O95484 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CLDN9O95484 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.44□□□□□ -1.54
CLDN9O95484 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.44□□□□□ -1.54
CLDN9O95484 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.44□□□□□ -1.54
CLDN9O95484 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.44□□□□□ -1.54
CLDN9O95484 GVINP1-202ENST00000531871 7271 ntBASIC5.44□□□□□ -1.54
CLDN9O95484 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
CLDN9O95484 CASC19-255ENST00000641733 1385 ntBASIC5.43□□□□□ -1.54
CLDN9O95484 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CLDN9O95484 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.43□□□□□ -1.54
CLDN9O95484 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
CLDN9O95484 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.43□□□□□ -1.54
CLDN9O95484 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.43□□□□□ -1.54
CLDN9O95484 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CLDN9O95484 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
CLDN9O95484 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
CLDN9O95484 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.43□□□□□ -1.54
CLDN9O95484 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.43□□□□□ -1.54
CLDN9O95484 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
CLDN9O95484 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
CLDN9O95484 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
CLDN9O95484 RN7SKP275-201ENST00000364626 301 ntBASIC5.43□□□□□ -1.54
CLDN9O95484 U3.28-201ENST00000391249 210 ntBASIC5.43□□□□□ -1.54
CLDN9O95484 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CLDN9O95484 MIR1282-201ENST00000408865 101 ntBASIC5.43□□□□□ -1.54
CLDN9O95484 AC066692.1-201ENST00000421721 457 ntBASIC5.43□□□□□ -1.54
CLDN9O95484 RIMKLBP2-201ENST00000424737 654 ntBASIC5.43□□□□□ -1.54
CLDN9O95484 RN7SL188P-201ENST00000469842 285 ntBASIC5.43□□□□□ -1.54
CLDN9O95484 AC087672.1-201ENST00000479876 766 ntBASIC5.43□□□□□ -1.54
CLDN9O95484 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC5.43□□□□□ -1.54
CLDN9O95484 RPS3AP15-201ENST00000483874 781 ntBASIC5.43□□□□□ -1.54
CLDN9O95484 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.43□□□□□ -1.54
CLDN9O95484 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.43□□□□□ -1.54
CLDN9O95484 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.43□□□□□ -1.54
CLDN9O95484 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.43□□□□□ -1.54
CLDN9O95484 SNORA70.20-201ENST00000516848 126 ntBASIC5.43□□□□□ -1.54
CLDN9O95484 TRIM77BP-201ENST00000524985 1119 ntBASIC5.43□□□□□ -1.54
CLDN9O95484 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CLDN9O95484 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.43□□□□□ -1.54
CLDN9O95484 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.43□□□□□ -1.54
CLDN9O95484 H3F3BP2-201ENST00000583907 357 ntBASIC5.43□□□□□ -1.54
CLDN9O95484 AL139124.1-201ENST00000609123 421 ntBASIC5.43□□□□□ -1.54
CLDN9O95484 MIR6133-201ENST00000617057 108 ntBASIC5.43□□□□□ -1.54
CLDN9O95484 RN7SL544P-201ENST00000617232 284 ntBASIC5.43□□□□□ -1.54
CLDN9O95484 RN7SL763P-201ENST00000620922 284 ntBASIC5.43□□□□□ -1.54
CLDN9O95484 AP003072.5-201ENST00000623872 773 ntBASIC5.43□□□□□ -1.54
CLDN9O95484 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.43□□□□□ -1.54
CLDN9O95484 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CLDN9O95484 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
CLDN9O95484 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
CLDN9O95484 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.43□□□□□ -1.54
CLDN9O95484 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.43□□□□□ -1.54
CLDN9O95484 AC007842.1-201ENST00000597336 2039 ntBASIC5.43□□□□□ -1.54
CLDN9O95484 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
CLDN9O95484 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
CLDN9O95484 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
CLDN9O95484 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CLDN9O95484 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
CLDN9O95484 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CLDN9O95484 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.42□□□□□ -1.54
CLDN9O95484 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CLDN9O95484 AL442128.2-201ENST00000620246 1824 ntBASIC5.42□□□□□ -1.54
CLDN9O95484 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CLDN9O95484 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CLDN9O95484 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
CLDN9O95484 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CLDN9O95484 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CLDN9O95484 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
CLDN9O95484 AL009179.1-201ENST00000406085 265 ntBASIC5.42□□□□□ -1.54
CLDN9O95484 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.42□□□□□ -1.54
CLDN9O95484 AL133482.1-201ENST00000415988 498 ntBASIC5.42□□□□□ -1.54
CLDN9O95484 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.42□□□□□ -1.54
CLDN9O95484 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.42□□□□□ -1.54
CLDN9O95484 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC5.42□□□□□ -1.54
CLDN9O95484 NPM1P18-201ENST00000434232 732 ntBASIC5.42□□□□□ -1.54
CLDN9O95484 NPM1P48-201ENST00000436002 853 ntBASIC5.42□□□□□ -1.54
CLDN9O95484 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.42□□□□□ -1.54
CLDN9O95484 MTND2P40-201ENST00000436718 841 ntBASIC5.42□□□□□ -1.54
CLDN9O95484 AL359265.1-201ENST00000440296 795 ntBASIC5.42□□□□□ -1.54
CLDN9O95484 HMGN1P2-201ENST00000445197 310 ntBASIC5.42□□□□□ -1.54
CLDN9O95484 IGBP1P3-201ENST00000447449 1000 ntBASIC5.42□□□□□ -1.54
CLDN9O95484 RPL12P24-201ENST00000474907 486 ntBASIC5.42□□□□□ -1.54
CLDN9O95484 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.42□□□□□ -1.54
CLDN9O95484 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.42□□□□□ -1.54
CLDN9O95484 HMGB1P42-201ENST00000532126 553 ntBASIC5.42□□□□□ -1.54
CLDN9O95484 OR5AM1P-201ENST00000532136 1032 ntBASIC5.42□□□□□ -1.54
CLDN9O95484 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.42□□□□□ -1.54
CLDN9O95484 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC5.42□□□□□ -1.54
CLDN9O95484 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC5.42□□□□□ -1.54
CLDN9O95484 FO681491.1-202ENST00000623392 737 ntBASIC5.42□□□□□ -1.54
CLDN9O95484 AL390318.1-201ENST00000624564 687 ntBASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms