Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC5.18□□□□□ -1.58
LMX1BO60663 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.18□□□□□ -1.58
LMX1BO60663 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.18□□□□□ -1.58
LMX1BO60663 CLIC4P2-201ENST00000601934 717 ntBASIC5.18□□□□□ -1.58
LMX1BO60663 AC027243.2-201ENST00000602530 724 ntBASIC5.18□□□□□ -1.58
LMX1BO60663 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.18□□□□□ -1.58
LMX1BO60663 AC093388.1-201ENST00000609166 430 ntBASIC5.18□□□□□ -1.58
LMX1BO60663 AL391834.1-201ENST00000609609 560 ntBASIC5.18□□□□□ -1.58
LMX1BO60663 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.18□□□□□ -1.58
LMX1BO60663 AC096861.1-201ENST00000616652 240 ntBASIC5.18□□□□□ -1.58
LMX1BO60663 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC5.18□□□□□ -1.58
LMX1BO60663 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
LMX1BO60663 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.18□□□□□ -1.58
LMX1BO60663 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.18□□□□□ -1.58
LMX1BO60663 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
LMX1BO60663 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
LMX1BO60663 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
LMX1BO60663 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.18□□□□□ -1.58
LMX1BO60663 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
LMX1BO60663 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
LMX1BO60663 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
LMX1BO60663 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.17□□□□□ -1.58
LMX1BO60663 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
LMX1BO60663 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
LMX1BO60663 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC5.17□□□□□ -1.58
LMX1BO60663 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
LMX1BO60663 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
LMX1BO60663 RNA5SP477-201ENST00000362639 119 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.17□□□□□ -1.58
LMX1BO60663 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
LMX1BO60663 RNU6-316P-201ENST00000391027 107 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
LMX1BO60663 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
LMX1BO60663 RN7SKP199-201ENST00000410325 305 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 EEF1B2P8-201ENST00000414101 671 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.17□□□□□ -1.58
LMX1BO60663 MARK2P12-201ENST00000420129 585 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.17□□□□□ -1.58
LMX1BO60663 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.17□□□□□ -1.58
LMX1BO60663 BRWD1P3-201ENST00000428816 390 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC5.17□□□□□ -1.58
LMX1BO60663 MRPS21P3-201ENST00000436696 262 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC5.17□□□□□ -1.58
LMX1BO60663 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC5.17□□□□□ -1.58
LMX1BO60663 AC016027.4-201ENST00000450866 277 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 AC002553.3-201ENST00000453002 341 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 TVP23BP2-201ENST00000455082 615 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.17□□□□□ -1.58
LMX1BO60663 HMGN1P8-201ENST00000463578 288 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC5.17□□□□□ -1.58
LMX1BO60663 RPL38P3-201ENST00000484463 213 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 AC090058.1-201ENST00000498788 435 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.17□□□□□ -1.58
LMX1BO60663 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC5.17□□□□□ -1.58
LMX1BO60663 MTND3P24-201ENST00000506306 329 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.17□□□□□ -1.58
LMX1BO60663 snoU109.5-201ENST00000516231 132 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 AC027308.1-201ENST00000517993 110 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.17□□□□□ -1.58
LMX1BO60663 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC5.17□□□□□ -1.58
LMX1BO60663 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC5.17□□□□□ -1.58
LMX1BO60663 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC5.17□□□□□ -1.58
LMX1BO60663 AC068305.2-201ENST00000550567 1205 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC5.17□□□□□ -1.58
LMX1BO60663 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.17□□□□□ -1.58
LMX1BO60663 AC092121.1-201ENST00000569452 202 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.17□□□□□ -1.58
LMX1BO60663 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.17□□□□□ -1.58
LMX1BO60663 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC5.17□□□□□ -1.58
LMX1BO60663 AC040174.2-201ENST00000602701 465 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC5.17□□□□□ -1.58
LMX1BO60663 AC084824.5-201ENST00000612009 413 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 AL162233.1-201ENST00000620014 944 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC5.17□□□□□ -1.58
LMX1BO60663 AL357562.1-201ENST00000624911 609 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 AC097372.4-201ENST00000625025 466 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.17□□□□□ -1.58
LMX1BO60663 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.17□□□□□ -1.58
LMX1BO60663 THAP12P9-201ENST00000503971 2360 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
LMX1BO60663 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
LMX1BO60663 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.17□□□□□ -1.58
LMX1BO60663 MSL3P1-202ENST00000440028 1468 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.17□□□□□ -1.58
LMX1BO60663 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
LMX1BO60663 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC5.17□□□□□ -1.58
LMX1BO60663 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
LMX1BO60663 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
LMX1BO60663 AL592494.2-201ENST00000425455 1548 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
LMX1BO60663 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
LMX1BO60663 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
LMX1BO60663 ZNF402P-201ENST00000404435 3100 ntBASIC5.17□□□□□ -1.58
LMX1BO60663 AC130360.2-201ENST00000533477 1556 ntBASIC5.16□□□□□ -1.58
LMX1BO60663 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC5.16□□□□□ -1.58
LMX1BO60663 AC137056.2-201ENST00000624055 1958 ntBASIC5.16□□□□□ -1.58
LMX1BO60663 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
LMX1BO60663 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
LMX1BO60663 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms