Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VMP1Q96GC9 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
VMP1Q96GC9 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
VMP1Q96GC9 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 MIR433-201ENST00000384837 93 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 MIR621-201ENST00000384919 96 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 AL445238.1-204ENST00000400311 463 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 AL096800.1-201ENST00000405326 893 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 RN7SKP108-201ENST00000411367 328 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC022431.1-201ENST00000450941 438 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC009963.3-201ENST00000458090 486 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 RN7SL221P-201ENST00000466190 281 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC104629.2-201ENST00000468627 598 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 HAUS1P1-201ENST00000505275 832 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC090958.1-201ENST00000511122 351 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 OR8X1P-201ENST00000534542 869 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 AP001858.2-201ENST00000536213 601 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC006512.2-201ENST00000543250 486 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
VMP1Q96GC9 SULT1C2P2-201ENST00000562517 294 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VMP1Q96GC9 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC124916.2-201ENST00000604416 224 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 AL139407.1-201ENST00000613826 1175 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 FAM27E2-201ENST00000619668 403 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 AP003499.2-201ENST00000624100 483 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC022726.2-201ENST00000634673 547 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC005332.5-201ENST00000591222 2919 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VMP1Q96GC9 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VMP1Q96GC9 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC022164.1-201ENST00000568767 2673 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VMP1Q96GC9 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
VMP1Q96GC9 AC109446.4-201ENST00000623235 2755 ntBASIC5.79□□□□□ -1.48
VMP1Q96GC9 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VMP1Q96GC9 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.79□□□□□ -1.48
VMP1Q96GC9 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VMP1Q96GC9 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VMP1Q96GC9 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.79□□□□□ -1.48
VMP1Q96GC9 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
VMP1Q96GC9 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VMP1Q96GC9 AL133243.2-201ENST00000610331 1621 ntBASIC5.79□□□□□ -1.48
VMP1Q96GC9 RNU4-44P-201ENST00000363050 141 ntBASIC5.79□□□□□ -1.48
VMP1Q96GC9 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
VMP1Q96GC9 RNU11-6P-201ENST00000391127 133 ntBASIC5.79□□□□□ -1.48
VMP1Q96GC9 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
VMP1Q96GC9 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
VMP1Q96GC9 OOSP1-201ENST00000398992 1270 ntBASIC5.79□□□□□ -1.48
VMP1Q96GC9 ZNF736P10Y-201ENST00000403990 1110 ntBASIC5.79□□□□□ -1.48
VMP1Q96GC9 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
VMP1Q96GC9 RNA5SP431-201ENST00000410312 120 ntBASIC5.79□□□□□ -1.48
VMP1Q96GC9 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC5.79□□□□□ -1.48
VMP1Q96GC9 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.79□□□□□ -1.48
VMP1Q96GC9 AC015977.1-201ENST00000418887 292 ntBASIC5.79□□□□□ -1.48
VMP1Q96GC9 AC016027.5-201ENST00000427227 210 ntBASIC5.79□□□□□ -1.48
VMP1Q96GC9 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC5.79□□□□□ -1.48
VMP1Q96GC9 AC093716.1-201ENST00000435923 377 ntBASIC5.79□□□□□ -1.48
VMP1Q96GC9 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC5.79□□□□□ -1.48
VMP1Q96GC9 AL035551.1-201ENST00000446931 348 ntBASIC5.79□□□□□ -1.48
VMP1Q96GC9 RPL7L1P1-201ENST00000448259 785 ntBASIC5.79□□□□□ -1.48
VMP1Q96GC9 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC5.79□□□□□ -1.48
VMP1Q96GC9 RPL34P33-201ENST00000486062 334 ntBASIC5.79□□□□□ -1.48
VMP1Q96GC9 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.79□□□□□ -1.48
VMP1Q96GC9 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC5.79□□□□□ -1.48
VMP1Q96GC9 IMPA1P1-201ENST00000510718 842 ntBASIC5.79□□□□□ -1.48
VMP1Q96GC9 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC5.79□□□□□ -1.48
VMP1Q96GC9 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC5.79□□□□□ -1.48
VMP1Q96GC9 RPA2P3-201ENST00000533268 770 ntBASIC5.79□□□□□ -1.48
VMP1Q96GC9 MRPS21P8-201ENST00000569196 235 ntBASIC5.79□□□□□ -1.48
VMP1Q96GC9 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VMP1Q96GC9 MIR4701-201ENST00000583094 63 ntBASIC5.79□□□□□ -1.48
VMP1Q96GC9 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC5.79□□□□□ -1.48
VMP1Q96GC9 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms