Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC58Q4VC31 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC58Q4VC31 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC58Q4VC31 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC58Q4VC31 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC58Q4VC31 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC58Q4VC31 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 ZNF652P1-201ENST00000442420 1309 ntBASIC5.05□□□□□ -1.6
CCDC58Q4VC31 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 AC006206.1-201ENST00000544842 3387 ntBASIC5.05□□□□□ -1.6
CCDC58Q4VC31 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 UBBP2-201ENST00000376781 231 ntBASIC5.05□□□□□ -1.6
CCDC58Q4VC31 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 RN7SKP247-201ENST00000411094 308 ntBASIC5.05□□□□□ -1.6
CCDC58Q4VC31 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 VN1R20P-201ENST00000425215 966 ntBASIC5.05□□□□□ -1.6
CCDC58Q4VC31 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 AC092646.1-201ENST00000427142 901 ntBASIC5.05□□□□□ -1.6
CCDC58Q4VC31 AL450263.2-201ENST00000439400 589 ntBASIC5.05□□□□□ -1.6
CCDC58Q4VC31 AC245291.3-201ENST00000443400 292 ntBASIC5.05□□□□□ -1.6
CCDC58Q4VC31 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 AC234771.2-201ENST00000445718 597 ntBASIC5.05□□□□□ -1.6
CCDC58Q4VC31 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 RPL36AP55-201ENST00000454114 305 ntBASIC5.05□□□□□ -1.6
CCDC58Q4VC31 AC099670.1-201ENST00000455141 783 ntBASIC5.05□□□□□ -1.6
CCDC58Q4VC31 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.05□□□□□ -1.6
CCDC58Q4VC31 COX6C-205ENST00000520468 1098 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 AC090022.1-201ENST00000546569 311 ntBASIC5.05□□□□□ -1.6
CCDC58Q4VC31 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 DHFRP1-201ENST00000579682 559 ntBASIC5.05□□□□□ -1.6
CCDC58Q4VC31 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 RNU6-84P-201ENST00000607737 102 ntBASIC5.05□□□□□ -1.6
CCDC58Q4VC31 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.05□□□□□ -1.6
CCDC58Q4VC31 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 AC074140.1-201ENST00000621617 208 ntBASIC5.05□□□□□ -1.6
CCDC58Q4VC31 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 NEAT1-202ENST00000501122 22743 ntBASIC5.05□□□□□ -1.6
CCDC58Q4VC31 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 FGG-205ENST00000407946 1636 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC58Q4VC31 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 AC011447.7-201ENST00000624228 1590 ntBASIC5.04□□□□□ -1.6
CCDC58Q4VC31 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 AC000374.1-201ENST00000434698 1745 ntBASIC5.04□□□□□ -1.6
CCDC58Q4VC31 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 RNA5SP110-201ENST00000362638 115 ntBASIC5.04□□□□□ -1.6
CCDC58Q4VC31 SNORA64.3-201ENST00000365647 134 ntBASIC5.04□□□□□ -1.6
CCDC58Q4VC31 U3.28-201ENST00000391249 210 ntBASIC5.04□□□□□ -1.6
CCDC58Q4VC31 AL133260.1-201ENST00000405720 405 ntBASIC5.04□□□□□ -1.6
CCDC58Q4VC31 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 AC004012.1-201ENST00000416593 534 ntTSL 4 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 RPL7AP51-201ENST00000422016 760 ntBASIC5.04□□□□□ -1.6
CCDC58Q4VC31 AC099782.1-201ENST00000425889 474 ntBASIC5.04□□□□□ -1.6
CCDC58Q4VC31 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 AC002553.2-201ENST00000453217 340 ntBASIC5.04□□□□□ -1.6
CCDC58Q4VC31 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 AC122688.1-201ENST00000541494 223 ntBASIC5.04□□□□□ -1.6
CCDC58Q4VC31 AL049870.3-201ENST00000555157 360 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 MRPL45P2-203ENST00000573318 473 ntBASIC5.04□□□□□ -1.6
CCDC58Q4VC31 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 FAM27E2-201ENST00000619668 403 ntBASIC5.04□□□□□ -1.6
CCDC58Q4VC31 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 AC093225.1-201ENST00000506867 1408 ntBASIC5.04□□□□□ -1.6
CCDC58Q4VC31 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC58Q4VC31 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms