Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CXCL12P48061 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CXCL12P48061 YES1-203ENST00000577961 4554 ntTSL 5 BASIC5.64□□□□□ -1.51
CXCL12P48061 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CXCL12P48061 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
CXCL12P48061 NCOA4P3-201ENST00000513203 1877 ntBASIC5.64□□□□□ -1.51
CXCL12P48061 AC018809.2-201ENST00000602436 3823 ntBASIC5.64□□□□□ -1.51
CXCL12P48061 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
CXCL12P48061 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CXCL12P48061 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
CXCL12P48061 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CXCL12P48061 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CXCL12P48061 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CXCL12P48061 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
CXCL12P48061 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CXCL12P48061 AL022323.4-201ENST00000623980 13120 ntBASIC5.63□□□□□ -1.51
CXCL12P48061 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
CXCL12P48061 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
CXCL12P48061 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CXCL12P48061 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
CXCL12P48061 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
CXCL12P48061 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
CXCL12P48061 RNU1-43P-201ENST00000365052 165 ntBASIC5.63□□□□□ -1.51
CXCL12P48061 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CXCL12P48061 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CXCL12P48061 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
CXCL12P48061 RNA5SP339-201ENST00000390987 122 ntBASIC5.63□□□□□ -1.51
CXCL12P48061 RPS26P13-201ENST00000419030 330 ntBASIC5.63□□□□□ -1.51
CXCL12P48061 AC016027.5-201ENST00000427227 210 ntBASIC5.63□□□□□ -1.51
CXCL12P48061 AC092017.2-201ENST00000427600 362 ntBASIC5.63□□□□□ -1.51
CXCL12P48061 AL035090.1-201ENST00000454835 332 ntBASIC5.63□□□□□ -1.51
CXCL12P48061 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC5.63□□□□□ -1.51
CXCL12P48061 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC5.63□□□□□ -1.51
CXCL12P48061 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.63□□□□□ -1.51
CXCL12P48061 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC5.63□□□□□ -1.51
CXCL12P48061 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.63□□□□□ -1.51
CXCL12P48061 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
CXCL12P48061 OR11J2P-201ENST00000555298 907 ntBASIC5.63□□□□□ -1.51
CXCL12P48061 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.63□□□□□ -1.51
CXCL12P48061 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.63□□□□□ -1.51
CXCL12P48061 TAS2R6P-201ENST00000605022 826 ntBASIC5.63□□□□□ -1.51
CXCL12P48061 AC074101.1-201ENST00000637861 241 ntBASIC5.63□□□□□ -1.51
CXCL12P48061 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
CXCL12P48061 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
CXCL12P48061 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
CXCL12P48061 AC009779.8-201ENST00000641684 4384 ntBASIC5.63□□□□□ -1.51
CXCL12P48061 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CXCL12P48061 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.63□□□□□ -1.51
CXCL12P48061 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC5.63□□□□□ -1.51
CXCL12P48061 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
CXCL12P48061 AL731532.1-201ENST00000623972 4236 ntBASIC5.63□□□□□ -1.51
CXCL12P48061 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
CXCL12P48061 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
CXCL12P48061 DPY19L2P2-203ENST00000435536 1858 ntBASIC5.62□□□□□ -1.51
CXCL12P48061 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CXCL12P48061 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
CXCL12P48061 MIR130A-201ENST00000385274 89 ntBASIC5.62□□□□□ -1.51
CXCL12P48061 AL109941.1-201ENST00000401925 229 ntBASIC5.62□□□□□ -1.51
CXCL12P48061 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.62□□□□□ -1.51
CXCL12P48061 DSTNP5-201ENST00000427921 523 ntBASIC5.62□□□□□ -1.51
CXCL12P48061 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
CXCL12P48061 AC096775.1-201ENST00000437724 448 ntBASIC5.62□□□□□ -1.51
CXCL12P48061 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.62□□□□□ -1.51
CXCL12P48061 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.62□□□□□ -1.51
CXCL12P48061 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CXCL12P48061 AC004129.2-201ENST00000457229 287 ntBASIC5.62□□□□□ -1.51
CXCL12P48061 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CXCL12P48061 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.62□□□□□ -1.51
CXCL12P48061 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.62□□□□□ -1.51
CXCL12P48061 AL355974.3-201ENST00000617383 467 ntBASIC5.62□□□□□ -1.51
CXCL12P48061 AL445528.2-201ENST00000620582 470 ntBASIC5.62□□□□□ -1.51
CXCL12P48061 CASC22-202ENST00000628396 802 ntTSL 5 BASIC5.62□□□□□ -1.51
CXCL12P48061 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CXCL12P48061 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.62□□□□□ -1.51
CXCL12P48061 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CXCL12P48061 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CXCL12P48061 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
CXCL12P48061 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.62□□□□□ -1.51
CXCL12P48061 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CXCL12P48061 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
CXCL12P48061 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC5.62□□□□□ -1.51
CXCL12P48061 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
CXCL12P48061 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.62□□□□□ -1.51
CXCL12P48061 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC5.62□□□□□ -1.51
CXCL12P48061 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CXCL12P48061 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
CXCL12P48061 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CXCL12P48061 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
CXCL12P48061 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CXCL12P48061 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CXCL12P48061 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
CXCL12P48061 U3.2-201ENST00000362981 210 ntBASIC5.61□□□□□ -1.51
CXCL12P48061 AL035419.1-201ENST00000397037 564 ntBASIC5.61□□□□□ -1.51
CXCL12P48061 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.61□□□□□ -1.51
CXCL12P48061 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.61□□□□□ -1.51
CXCL12P48061 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.61□□□□□ -1.51
CXCL12P48061 PA2G4P6-201ENST00000438325 1197 ntBASIC5.61□□□□□ -1.51
CXCL12P48061 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CXCL12P48061 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC5.61□□□□□ -1.51
CXCL12P48061 DNAJB5P1-201ENST00000454004 806 ntBASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms