Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC7.11□□□□□ -1.27
COL18A1P39060 AC092754.1-201ENST00000472975 479 ntBASIC7.11□□□□□ -1.27
COL18A1P39060 PDCL3P4-201ENST00000489621 720 ntBASIC7.11□□□□□ -1.27
COL18A1P39060 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC7.11□□□□□ -1.27
COL18A1P39060 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC7.11□□□□□ -1.27
COL18A1P39060 AC109464.1-201ENST00000511091 819 ntBASIC7.11□□□□□ -1.27
COL18A1P39060 OR7H2P-201ENST00000513483 306 ntBASIC7.11□□□□□ -1.27
COL18A1P39060 snoU109.5-201ENST00000516231 132 ntBASIC7.11□□□□□ -1.27
COL18A1P39060 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC7.11□□□□□ -1.27
COL18A1P39060 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC7.11□□□□□ -1.27
COL18A1P39060 AC022164.1-201ENST00000568767 2673 ntBASIC7.11□□□□□ -1.27
COL18A1P39060 KCNN3-201ENST00000271915 13033 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL18A1P39060 FBXO40-201ENST00000338040 5929 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL18A1P39060 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL18A1P39060 AL449283.1-201ENST00000602631 3403 ntBASIC7.11□□□□□ -1.27
COL18A1P39060 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL18A1P39060 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC7.11□□□□□ -1.27
COL18A1P39060 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC7.11□□□□□ -1.27
COL18A1P39060 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL18A1P39060 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL18A1P39060 VANGL1-204ENST00000369510 8647 ntAPPRIS ALT1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL18A1P39060 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
COL18A1P39060 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL18A1P39060 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL18A1P39060 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC7.1□□□□□ -1.27
COL18A1P39060 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC7.1□□□□□ -1.27
COL18A1P39060 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC7.1□□□□□ -1.27
COL18A1P39060 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC7.1□□□□□ -1.27
COL18A1P39060 AL133482.1-201ENST00000415988 498 ntBASIC7.1□□□□□ -1.27
COL18A1P39060 RIMKLBP2-201ENST00000424737 654 ntBASIC7.1□□□□□ -1.27
COL18A1P39060 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC7.1□□□□□ -1.27
COL18A1P39060 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC7.1□□□□□ -1.27
COL18A1P39060 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
COL18A1P39060 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC7.1□□□□□ -1.27
COL18A1P39060 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC7.1□□□□□ -1.27
COL18A1P39060 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL18A1P39060 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC7.1□□□□□ -1.27
COL18A1P39060 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC7.1□□□□□ -1.27
COL18A1P39060 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC7.1□□□□□ -1.27
COL18A1P39060 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC7.1□□□□□ -1.27
COL18A1P39060 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC7.1□□□□□ -1.27
COL18A1P39060 AC005084.1-201ENST00000605160 304 ntBASIC7.1□□□□□ -1.27
COL18A1P39060 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL18A1P39060 AC007114.2-201ENST00000576014 4281 ntBASIC7.1□□□□□ -1.27
COL18A1P39060 NXF4-202ENST00000416098 1465 ntBASIC7.1□□□□□ -1.27
COL18A1P39060 AC007996.1-201ENST00000620414 2821 ntBASIC7.1□□□□□ -1.27
COL18A1P39060 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC7.1□□□□□ -1.27
COL18A1P39060 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL18A1P39060 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL18A1P39060 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
COL18A1P39060 ENAH-204ENST00000366844 13168 ntAPPRIS P4 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL18A1P39060 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL18A1P39060 AC006058.1-201ENST00000568686 5067 ntBASIC7.1□□□□□ -1.27
COL18A1P39060 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC7.1□□□□□ -1.27
COL18A1P39060 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL18A1P39060 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC7.1□□□□□ -1.27
COL18A1P39060 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL18A1P39060 EXOC5-211ENST00000621441 10589 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL18A1P39060 AC012618.3-205ENST00000637896 1496 ntBASIC7.1□□□□□ -1.27
COL18A1P39060 RNA5SP455-201ENST00000365190 119 ntBASIC7.1□□□□□ -1.27
COL18A1P39060 OR10T1P-201ENST00000424327 947 ntBASIC7.1□□□□□ -1.27
COL18A1P39060 USP9YP9-201ENST00000429406 715 ntBASIC7.1□□□□□ -1.27
COL18A1P39060 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC7.1□□□□□ -1.27
COL18A1P39060 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC7.1□□□□□ -1.27
COL18A1P39060 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC7.1□□□□□ -1.27
COL18A1P39060 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC7.1□□□□□ -1.27
COL18A1P39060 KNOP1P3-201ENST00000446933 426 ntBASIC7.1□□□□□ -1.27
COL18A1P39060 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC7.1□□□□□ -1.27
COL18A1P39060 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
COL18A1P39060 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC7.1□□□□□ -1.27
COL18A1P39060 AL353729.2-201ENST00000605859 1249 ntBASIC7.1□□□□□ -1.27
COL18A1P39060 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC7.1□□□□□ -1.27
COL18A1P39060 UGP2-232ENST00000640075 567 ntTSL 5 BASIC7.1□□□□□ -1.27
COL18A1P39060 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
COL18A1P39060 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC7.1□□□□□ -1.27
COL18A1P39060 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC7.1□□□□□ -1.27
COL18A1P39060 SRGAP2-203ENST00000573034 6301 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL18A1P39060 MIPEPP2-201ENST00000422560 1819 ntBASIC7.1□□□□□ -1.27
COL18A1P39060 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL18A1P39060 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC7.1□□□□□ -1.27
COL18A1P39060 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC7.09□□□□□ -1.27
COL18A1P39060 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL18A1P39060 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL18A1P39060 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL18A1P39060 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL18A1P39060 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC7.09□□□□□ -1.27
COL18A1P39060 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL18A1P39060 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL18A1P39060 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC7.09□□□□□ -1.27
COL18A1P39060 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL18A1P39060 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL18A1P39060 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL18A1P39060 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL18A1P39060 MIR105-1-201ENST00000385222 81 ntBASIC7.09□□□□□ -1.27
COL18A1P39060 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL18A1P39060 AC019050.1-201ENST00000418508 492 ntBASIC7.09□□□□□ -1.27
COL18A1P39060 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
COL18A1P39060 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC7.09□□□□□ -1.27
COL18A1P39060 AC009220.1-201ENST00000451614 275 ntBASIC7.09□□□□□ -1.27
COL18A1P39060 AC006463.2-201ENST00000473326 348 ntBASIC7.09□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms