Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
COL3A1P02461 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL3A1P02461 ANK2-203ENST00000394537 6313 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL3A1P02461 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC7.23□□□□□ -1.25
COL3A1P02461 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
COL3A1P02461 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL3A1P02461 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
COL3A1P02461 AC240504.1-201ENST00000395709 845 ntBASIC7.23□□□□□ -1.25
COL3A1P02461 PPIAP9-201ENST00000403866 498 ntBASIC7.23□□□□□ -1.25
COL3A1P02461 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC7.23□□□□□ -1.25
COL3A1P02461 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC7.23□□□□□ -1.25
COL3A1P02461 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC7.23□□□□□ -1.25
COL3A1P02461 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
COL3A1P02461 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC7.23□□□□□ -1.25
COL3A1P02461 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC7.23□□□□□ -1.25
COL3A1P02461 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC7.23□□□□□ -1.25
COL3A1P02461 RN7SL447P-201ENST00000494711 245 ntBASIC7.23□□□□□ -1.25
COL3A1P02461 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC7.23□□□□□ -1.25
COL3A1P02461 OR4A17P-201ENST00000526032 904 ntBASIC7.23□□□□□ -1.25
COL3A1P02461 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC7.23□□□□□ -1.25
COL3A1P02461 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC7.23□□□□□ -1.25
COL3A1P02461 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
COL3A1P02461 AC016180.1-201ENST00000567945 403 ntBASIC7.23□□□□□ -1.25
COL3A1P02461 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL3A1P02461 TAS2R6P-201ENST00000605022 826 ntBASIC7.23□□□□□ -1.25
COL3A1P02461 AC021422.1-201ENST00000621212 473 ntBASIC7.23□□□□□ -1.25
COL3A1P02461 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC7.23□□□□□ -1.25
COL3A1P02461 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
COL3A1P02461 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC7.23□□□□□ -1.25
COL3A1P02461 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC7.22□□□□□ -1.25
COL3A1P02461 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC7.22□□□□□ -1.25
COL3A1P02461 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL3A1P02461 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC7.22□□□□□ -1.25
COL3A1P02461 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL3A1P02461 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL3A1P02461 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL3A1P02461 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC7.22□□□□□ -1.25
COL3A1P02461 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC7.22□□□□□ -1.25
COL3A1P02461 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL3A1P02461 MAPK10-270ENST00000641102 3538 ntBASIC7.22□□□□□ -1.25
COL3A1P02461 U3.7-201ENST00000363668 216 ntBASIC7.22□□□□□ -1.25
COL3A1P02461 RNU4-2-201ENST00000365668 141 ntBASIC7.22□□□□□ -1.25
COL3A1P02461 RNU1-106P-201ENST00000384382 164 ntBASIC7.22□□□□□ -1.25
COL3A1P02461 RPL7L1P9-201ENST00000431298 745 ntBASIC7.22□□□□□ -1.25
COL3A1P02461 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC7.22□□□□□ -1.25
COL3A1P02461 AC104634.1-201ENST00000452720 462 ntBASIC7.22□□□□□ -1.25
COL3A1P02461 AC058823.1-201ENST00000485315 474 ntBASIC7.22□□□□□ -1.25
COL3A1P02461 HIGD1AP14-201ENST00000507617 282 ntBASIC7.22□□□□□ -1.25
COL3A1P02461 AC109464.1-201ENST00000511091 819 ntBASIC7.22□□□□□ -1.25
COL3A1P02461 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC7.22□□□□□ -1.25
COL3A1P02461 SCARNA20.4-201ENST00000516969 131 ntBASIC7.22□□□□□ -1.25
COL3A1P02461 OR8G3P-201ENST00000533406 921 ntBASIC7.22□□□□□ -1.25
COL3A1P02461 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC7.22□□□□□ -1.25
COL3A1P02461 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC7.22□□□□□ -1.25
COL3A1P02461 MIR4700-201ENST00000578311 74 ntBASIC7.22□□□□□ -1.25
COL3A1P02461 GMFG-202ENST00000594700 397 ntTSL 2 BASIC7.22□□□□□ -1.25
COL3A1P02461 AC069307.1-201ENST00000602820 447 ntBASIC7.22□□□□□ -1.25
COL3A1P02461 XIST-210ENST00000602863 775 ntTSL 3 BASIC7.22□□□□□ -1.25
COL3A1P02461 AC108738.1-201ENST00000603703 237 ntBASIC7.22□□□□□ -1.25
COL3A1P02461 AL352984.2-202ENST00000613699 155 ntBASIC7.22□□□□□ -1.25
COL3A1P02461 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL3A1P02461 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC7.22□□□□□ -1.25
COL3A1P02461 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC7.22□□□□□ -1.25
COL3A1P02461 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC7.22□□□□□ -1.25
COL3A1P02461 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL3A1P02461 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC7.22□□□□□ -1.25
COL3A1P02461 AL359955.1-201ENST00000455242 3275 ntBASIC7.22□□□□□ -1.25
COL3A1P02461 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC7.21□□□□□ -1.25
COL3A1P02461 MELK-211ENST00000545008 2236 ntTSL 2 BASIC7.21□□□□□ -1.25
COL3A1P02461 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
COL3A1P02461 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC7.21□□□□□ -1.25
COL3A1P02461 AL078621.3-201ENST00000623707 2042 ntBASIC7.21□□□□□ -1.26
COL3A1P02461 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC7.21□□□□□ -1.26
COL3A1P02461 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL3A1P02461 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
COL3A1P02461 AMELX-201ENST00000348912 737 ntTSL 5 BASIC7.21□□□□□ -1.26
COL3A1P02461 RN7SKP145-201ENST00000363291 303 ntBASIC7.21□□□□□ -1.26
COL3A1P02461 U3.28-201ENST00000391249 210 ntBASIC7.21□□□□□ -1.26
COL3A1P02461 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC7.21□□□□□ -1.26
COL3A1P02461 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC7.21□□□□□ -1.26
COL3A1P02461 MTND2P9-201ENST00000422293 931 ntBASIC7.21□□□□□ -1.26
COL3A1P02461 EI24P4-201ENST00000423683 1078 ntBASIC7.21□□□□□ -1.26
COL3A1P02461 BX276092.6-201ENST00000430476 250 ntBASIC7.21□□□□□ -1.26
COL3A1P02461 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC7.21□□□□□ -1.26
COL3A1P02461 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC7.21□□□□□ -1.26
COL3A1P02461 BX276092.8-201ENST00000455722 250 ntBASIC7.21□□□□□ -1.26
COL3A1P02461 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC7.21□□□□□ -1.26
COL3A1P02461 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL3A1P02461 AC130364.2-201ENST00000528639 604 ntBASIC7.21□□□□□ -1.26
COL3A1P02461 HNRNPCP1-201ENST00000556181 766 ntBASIC7.21□□□□□ -1.26
COL3A1P02461 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC7.21□□□□□ -1.26
COL3A1P02461 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC7.21□□□□□ -1.26
COL3A1P02461 AC108359.1-201ENST00000616451 1211 ntBASIC7.21□□□□□ -1.26
COL3A1P02461 AC021766.1-201ENST00000624404 741 ntBASIC7.21□□□□□ -1.26
COL3A1P02461 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC7.21□□□□□ -1.26
COL3A1P02461 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC7.21□□□□□ -1.26
COL3A1P02461 AC007938.2-201ENST00000604666 2634 ntBASIC7.21□□□□□ -1.26
COL3A1P02461 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
COL3A1P02461 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC7.21□□□□□ -1.26
COL3A1P02461 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms