Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC9.6□□□□□ -0.87
CUX2O14529 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC9.6□□□□□ -0.87
CUX2O14529 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
CUX2O14529 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
CUX2O14529 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
CUX2O14529 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
CUX2O14529 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
CUX2O14529 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC9.6□□□□□ -0.87
CUX2O14529 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
CUX2O14529 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC9.6□□□□□ -0.87
CUX2O14529 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC9.6□□□□□ -0.87
CUX2O14529 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
CUX2O14529 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
CUX2O14529 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
CUX2O14529 JPX-212ENST00000639185 9658 ntTSL 5 BASIC9.6□□□□□ -0.87
CUX2O14529 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC9.6□□□□□ -0.87
CUX2O14529 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
CUX2O14529 AC104162.1-201ENST00000430831 2382 ntBASIC9.6□□□□□ -0.87
CUX2O14529 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC9.6□□□□□ -0.87
CUX2O14529 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
CUX2O14529 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC9.59□□□□□ -0.87
CUX2O14529 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
CUX2O14529 LINC01881-201ENST00000416103 412 ntBASIC9.59□□□□□ -0.87
CUX2O14529 AC015977.1-201ENST00000418887 292 ntBASIC9.59□□□□□ -0.87
CUX2O14529 AC009480.2-201ENST00000422916 432 ntBASIC9.59□□□□□ -0.87
CUX2O14529 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC9.59□□□□□ -0.87
CUX2O14529 AC093655.2-201ENST00000425735 631 ntBASIC9.59□□□□□ -0.87
CUX2O14529 AL451062.2-201ENST00000427515 271 ntBASIC9.59□□□□□ -0.87
CUX2O14529 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC9.59□□□□□ -0.87
CUX2O14529 AC105399.1-202ENST00000447303 205 ntBASIC9.59□□□□□ -0.87
CUX2O14529 AL022319.1-201ENST00000458183 1167 ntBASIC9.59□□□□□ -0.87
CUX2O14529 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
CUX2O14529 AP000889.1-201ENST00000530968 660 ntBASIC9.59□□□□□ -0.87
CUX2O14529 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC9.59□□□□□ -0.87
CUX2O14529 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC9.59□□□□□ -0.87
CUX2O14529 AL031320.1-201ENST00000604177 357 ntBASIC9.59□□□□□ -0.87
CUX2O14529 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC9.59□□□□□ -0.87
CUX2O14529 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC9.59□□□□□ -0.87
CUX2O14529 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC9.59□□□□□ -0.87
CUX2O14529 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC9.59□□□□□ -0.87
CUX2O14529 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC9.59□□□□□ -0.87
CUX2O14529 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.87
CUX2O14529 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
CUX2O14529 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC9.59□□□□□ -0.87
CUX2O14529 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC9.59□□□□□ -0.87
CUX2O14529 AL079305.1-201ENST00000623159 3008 ntBASIC9.59□□□□□ -0.87
CUX2O14529 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC9.59□□□□□ -0.87
CUX2O14529 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC9.59□□□□□ -0.87
CUX2O14529 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC9.59□□□□□ -0.87
CUX2O14529 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
CUX2O14529 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC9.59□□□□□ -0.87
CUX2O14529 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.87
CUX2O14529 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC9.59□□□□□ -0.87
CUX2O14529 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC9.59□□□□□ -0.87
CUX2O14529 RN7SKP126-201ENST00000411143 300 ntBASIC9.59□□□□□ -0.87
CUX2O14529 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC9.59□□□□□ -0.87
CUX2O14529 AL365220.1-201ENST00000432923 399 ntBASIC9.59□□□□□ -0.87
CUX2O14529 OR11I1P-201ENST00000486033 954 ntBASIC9.59□□□□□ -0.87
CUX2O14529 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC9.59□□□□□ -0.87
CUX2O14529 IGKV1-32-201ENST00000519290 311 ntBASIC9.59□□□□□ -0.87
CUX2O14529 HMGB1P40-201ENST00000525121 540 ntBASIC9.59□□□□□ -0.87
CUX2O14529 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC9.59□□□□□ -0.87
CUX2O14529 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC9.59□□□□□ -0.87
CUX2O14529 AC244502.2-201ENST00000543361 851 ntBASIC9.59□□□□□ -0.87
CUX2O14529 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC9.59□□□□□ -0.87
CUX2O14529 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC9.59□□□□□ -0.87
CUX2O14529 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC9.59□□□□□ -0.87
CUX2O14529 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC9.59□□□□□ -0.87
CUX2O14529 UBE2FP2-201ENST00000566646 462 ntBASIC9.59□□□□□ -0.87
CUX2O14529 AC034105.4-201ENST00000568304 277 ntBASIC9.59□□□□□ -0.87
CUX2O14529 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC9.59□□□□□ -0.87
CUX2O14529 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC9.59□□□□□ -0.87
CUX2O14529 CYP4F35P-202ENST00000636121 390 ntBASIC9.59□□□□□ -0.87
CUX2O14529 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.87
CUX2O14529 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
CUX2O14529 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.87
CUX2O14529 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC9.59□□□□□ -0.87
CUX2O14529 GCNT3-201ENST00000396065 4933 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
CUX2O14529 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC9.58□□□□□ -0.88
CUX2O14529 AC022034.1-201ENST00000512867 2156 ntBASIC9.58□□□□□ -0.88
CUX2O14529 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC9.58□□□□□ -0.88
CUX2O14529 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
CUX2O14529 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.88
CUX2O14529 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
CUX2O14529 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC9.58□□□□□ -0.88
CUX2O14529 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC9.58□□□□□ -0.88
CUX2O14529 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC9.58□□□□□ -0.88
CUX2O14529 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC9.58□□□□□ -0.88
CUX2O14529 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC9.58□□□□□ -0.88
CUX2O14529 AC119674.1-213ENST00000641177 1386 ntBASIC9.58□□□□□ -0.88
CUX2O14529 RN7SKP6-201ENST00000364795 319 ntBASIC9.58□□□□□ -0.88
CUX2O14529 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
CUX2O14529 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC9.58□□□□□ -0.88
CUX2O14529 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC9.58□□□□□ -0.88
CUX2O14529 RN7SL352P-201ENST00000466002 277 ntBASIC9.58□□□□□ -0.88
CUX2O14529 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
CUX2O14529 AC093799.2-201ENST00000610062 578 ntBASIC9.58□□□□□ -0.88
CUX2O14529 AL161637.1-201ENST00000622380 412 ntBASIC9.58□□□□□ -0.88
CUX2O14529 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
CUX2O14529 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC9.58□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms