Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
NKX3-1Q99801 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
NKX3-1Q99801 AP001284.1-201ENST00000528393 2118 ntBASIC5.09□□□□□ -1.59
NKX3-1Q99801 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.6
NKX3-1Q99801 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
NKX3-1Q99801 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
NKX3-1Q99801 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
NKX3-1Q99801 IFIT1P1-201ENST00000400497 1449 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 OR56A4-201ENST00000330728 1209 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
NKX3-1Q99801 RNA5SP211-201ENST00000365516 117 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 TPT1-204ENST00000379060 764 ntTSL 5 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 RNU6-152P-201ENST00000384037 107 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 MYL6P5-201ENST00000412707 459 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 RPL35AP31-201ENST00000418340 337 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 AL356806.1-201ENST00000422524 916 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 PLA2G12AP2-201ENST00000424744 264 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 KCTD9P1-201ENST00000430462 1167 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 MTCO3P43-201ENST00000440974 771 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 AP002884.1-201ENST00000479691 655 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 AC016687.1-201ENST00000482574 353 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
NKX3-1Q99801 COL6A4P2-205ENST00000509855 506 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 AC036111.2-201ENST00000533247 901 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 TOMM20P1-201ENST00000534518 427 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
NKX3-1Q99801 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 AC007346.2-201ENST00000564816 892 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 AC090826.1-203ENST00000569235 490 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 AC079315.1-201ENST00000602952 623 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 AC015802.5-201ENST00000607478 399 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 AC241377.1-201ENST00000619797 406 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 AP003400.6-201ENST00000624698 740 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 AL357140.4-201ENST00000636827 412 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 OR56A4-203ENST00000641279 1209 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
NKX3-1Q99801 CUL4AP1-201ENST00000514750 1863 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 MFSD8-239ENST00000641590 2479 ntBASIC5.08□□□□□ -1.6
NKX3-1Q99801 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
NKX3-1Q99801 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
NKX3-1Q99801 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NKX3-1Q99801 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NKX3-1Q99801 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NKX3-1Q99801 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NKX3-1Q99801 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 MAPK10-338ENST00000641647 3362 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
NKX3-1Q99801 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 RBMY1HP-201ENST00000382759 1389 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 SAMM50P1-201ENST00000455403 1399 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 GVINP1-202ENST00000531871 7271 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NKX3-1Q99801 FBXL21-201ENST00000297158 1305 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 SNORA21-201ENST00000362423 132 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 RNU1-134P-201ENST00000362935 165 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 RNA5SP433-201ENST00000364491 114 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 RNA5SP431-201ENST00000410312 120 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 AJ239321.1-201ENST00000424255 564 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 RPL5P2-201ENST00000429598 854 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 MTCO1P57-201ENST00000432182 261 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NKX3-1Q99801 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 FTLP8-201ENST00000446770 267 ntBASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 141.5 ms