Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 NEPNP-201ENST00000404786 1371 ntBASIC5.74□□□□□ -1.49
VPS35Q96QK1 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS35Q96QK1 AL359955.1-201ENST00000455242 3275 ntBASIC5.74□□□□□ -1.49
VPS35Q96QK1 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VPS35Q96QK1 OR9K1P-202ENST00000641111 3217 ntBASIC5.74□□□□□ -1.49
VPS35Q96QK1 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VPS35Q96QK1 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VPS35Q96QK1 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS35Q96QK1 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.73□□□□□ -1.49
VPS35Q96QK1 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
VPS35Q96QK1 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.73□□□□□ -1.49
VPS35Q96QK1 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS35Q96QK1 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
VPS35Q96QK1 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS35Q96QK1 RNU6-167P-201ENST00000384292 106 ntBASIC5.73□□□□□ -1.49
VPS35Q96QK1 AL357752.1-201ENST00000412817 349 ntBASIC5.73□□□□□ -1.49
VPS35Q96QK1 AC017078.1-201ENST00000416146 368 ntBASIC5.73□□□□□ -1.49
VPS35Q96QK1 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.73□□□□□ -1.49
VPS35Q96QK1 IPPKP1-201ENST00000422501 768 ntBASIC5.73□□□□□ -1.49
VPS35Q96QK1 VN1R21P-201ENST00000426703 765 ntBASIC5.73□□□□□ -1.49
VPS35Q96QK1 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.73□□□□□ -1.49
VPS35Q96QK1 RPS29P14-201ENST00000431518 171 ntBASIC5.73□□□□□ -1.49
VPS35Q96QK1 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.73□□□□□ -1.49
VPS35Q96QK1 OR7E116P-201ENST00000448529 957 ntBASIC5.73□□□□□ -1.49
VPS35Q96QK1 FRG2FP-204ENST00000453982 852 ntBASIC5.73□□□□□ -1.49
VPS35Q96QK1 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS35Q96QK1 AC007998.1-201ENST00000474156 672 ntBASIC5.73□□□□□ -1.49
VPS35Q96QK1 AC022215.1-201ENST00000481770 362 ntBASIC5.73□□□□□ -1.49
VPS35Q96QK1 RN7SL570P-201ENST00000484405 292 ntBASIC5.73□□□□□ -1.49
VPS35Q96QK1 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.73□□□□□ -1.49
VPS35Q96QK1 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS35Q96QK1 IGKV2-4-201ENST00000523070 340 ntBASIC5.73□□□□□ -1.49
VPS35Q96QK1 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS35Q96QK1 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.73□□□□□ -1.49
VPS35Q96QK1 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.73□□□□□ -1.49
VPS35Q96QK1 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
VPS35Q96QK1 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS35Q96QK1 RN7SL544P-201ENST00000617232 284 ntBASIC5.73□□□□□ -1.49
VPS35Q96QK1 RN7SL763P-201ENST00000620922 284 ntBASIC5.73□□□□□ -1.49
VPS35Q96QK1 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS35Q96QK1 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS35Q96QK1 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS35Q96QK1 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS35Q96QK1 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS35Q96QK1 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS35Q96QK1 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS35Q96QK1 AL034546.1-201ENST00000623740 3693 ntBASIC5.73□□□□□ -1.49
VPS35Q96QK1 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
VPS35Q96QK1 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.73□□□□□ -1.49
VPS35Q96QK1 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS35Q96QK1 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS35Q96QK1 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS35Q96QK1 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS35Q96QK1 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 MFSD8-219ENST00000641228 2559 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS35Q96QK1 MFSD8-239ENST00000641590 2479 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 AC239868.2-201ENST00000564237 4527 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS35Q96QK1 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 AC123912.3-201ENST00000600907 1367 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS35Q96QK1 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
VPS35Q96QK1 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
VPS35Q96QK1 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS35Q96QK1 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS35Q96QK1 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS35Q96QK1 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
VPS35Q96QK1 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS35Q96QK1 RNA5SP284-201ENST00000384547 118 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 AL354868.1-201ENST00000417077 482 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 AC127526.2-201ENST00000426436 775 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 VTI1BP4-201ENST00000427516 527 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 CRIP1P1-201ENST00000427567 185 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
VPS35Q96QK1 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 RPL12P16-201ENST00000431098 498 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 RPL12P11-201ENST00000439970 501 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 PSMA2P2-201ENST00000504319 686 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
VPS35Q96QK1 SNORD46.2-201ENST00000516021 102 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 AC139365.2-201ENST00000517972 253 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 IGLV3-30-201ENST00000524362 298 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms