Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC006927.3-201ENST00000638789 384 ntBASIC7.19□□□□□ -1.26
LIG3P49916 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC7.19□□□□□ -1.26
LIG3P49916 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
LIG3P49916 AL161901.1-201ENST00000624954 3425 ntBASIC7.19□□□□□ -1.26
LIG3P49916 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
LIG3P49916 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC7.19□□□□□ -1.26
LIG3P49916 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
LIG3P49916 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
LIG3P49916 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC7.19□□□□□ -1.26
LIG3P49916 IMMTP1-201ENST00000435590 2219 ntBASIC7.19□□□□□ -1.26
LIG3P49916 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
LIG3P49916 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
LIG3P49916 AP002833.3-201ENST00000625075 2265 ntBASIC7.18□□□□□ -1.26
LIG3P49916 TRIM75P-201ENST00000503032 1407 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
LIG3P49916 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
LIG3P49916 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
LIG3P49916 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC7.18□□□□□ -1.26
LIG3P49916 AC011504.1-201ENST00000623331 4103 ntBASIC7.18□□□□□ -1.26
LIG3P49916 MAMDC2-AS1-202ENST00000414515 2097 ntTSL 5 BASIC7.18□□□□□ -1.26
LIG3P49916 SPATA2P1-201ENST00000431223 2055 ntBASIC7.18□□□□□ -1.26
LIG3P49916 AC092646.2-201ENST00000431242 2095 ntBASIC7.18□□□□□ -1.26
LIG3P49916 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC7.18□□□□□ -1.26
LIG3P49916 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
LIG3P49916 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC7.18□□□□□ -1.26
LIG3P49916 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
LIG3P49916 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
LIG3P49916 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
LIG3P49916 RNU4-75P-201ENST00000364621 146 ntBASIC7.18□□□□□ -1.26
LIG3P49916 C1orf162-202ENST00000369718 915 ntAPPRIS ALT2 TSL 2 BASIC7.18□□□□□ -1.26
LIG3P49916 MIR138-2-201ENST00000384916 84 ntBASIC7.18□□□□□ -1.26
LIG3P49916 AL139100.1-201ENST00000408001 498 ntBASIC7.18□□□□□ -1.26
LIG3P49916 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC7.18□□□□□ -1.26
LIG3P49916 MKX-AS1-201ENST00000412244 745 ntTSL 3 BASIC7.18□□□□□ -1.26
LIG3P49916 AC019211.1-201ENST00000432993 754 ntTSL 3 BASIC7.18□□□□□ -1.26
LIG3P49916 LSM3P3-201ENST00000436601 306 ntBASIC7.18□□□□□ -1.26
LIG3P49916 MRPS21P3-201ENST00000436696 262 ntBASIC7.18□□□□□ -1.26
LIG3P49916 PA2G4P6-201ENST00000438325 1197 ntBASIC7.18□□□□□ -1.26
LIG3P49916 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC7.18□□□□□ -1.26
LIG3P49916 RPSAP7-201ENST00000456871 885 ntBASIC7.18□□□□□ -1.26
LIG3P49916 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC7.18□□□□□ -1.26
LIG3P49916 NDUFB2-215ENST00000482954 544 ntTSL 3 BASIC7.18□□□□□ -1.26
LIG3P49916 RPL34P33-201ENST00000486062 334 ntBASIC7.18□□□□□ -1.26
LIG3P49916 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
LIG3P49916 TECRP2-201ENST00000503270 928 ntBASIC7.18□□□□□ -1.26
LIG3P49916 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC7.18□□□□□ -1.26
LIG3P49916 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC7.18□□□□□ -1.26
LIG3P49916 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC7.18□□□□□ -1.26
LIG3P49916 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
LIG3P49916 AC093755.1-201ENST00000512950 1023 ntBASIC7.18□□□□□ -1.26
LIG3P49916 MTATP6P1-201ENST00000514057 681 ntBASIC7.18□□□□□ -1.26
LIG3P49916 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC7.18□□□□□ -1.26
LIG3P49916 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC7.18□□□□□ -1.26
LIG3P49916 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC7.18□□□□□ -1.26
LIG3P49916 AP003080.1-202ENST00000526526 915 ntBASIC7.18□□□□□ -1.26
LIG3P49916 AC010247.1-201ENST00000527895 759 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
LIG3P49916 AC079089.1-203ENST00000533300 431 ntTSL 5 BASIC7.18□□□□□ -1.26
LIG3P49916 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC7.18□□□□□ -1.26
LIG3P49916 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC7.18□□□□□ -1.26
LIG3P49916 AC021979.2-201ENST00000553644 209 ntTSL 5 BASIC7.18□□□□□ -1.26
LIG3P49916 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC7.18□□□□□ -1.26
LIG3P49916 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC7.18□□□□□ -1.26
LIG3P49916 AL031846.1-201ENST00000560933 314 ntBASIC7.18□□□□□ -1.26
LIG3P49916 CASC16-202ENST00000563844 610 ntTSL 3 BASIC7.18□□□□□ -1.26
LIG3P49916 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
LIG3P49916 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC7.18□□□□□ -1.26
LIG3P49916 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC7.18□□□□□ -1.26
LIG3P49916 MIR5010-201ENST00000582846 120 ntBASIC7.18□□□□□ -1.26
LIG3P49916 AP005328.2-201ENST00000606879 657 ntTSL 3 BASIC7.18□□□□□ -1.26
LIG3P49916 FAM13A-AS1_2.1-201ENST00000611121 108 ntBASIC7.18□□□□□ -1.26
LIG3P49916 AL589182.1-201ENST00000611785 320 ntTSL 5 BASIC7.18□□□□□ -1.26
LIG3P49916 AP004607.9-201ENST00000618202 316 ntBASIC7.18□□□□□ -1.26
LIG3P49916 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC7.18□□□□□ -1.26
LIG3P49916 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC7.18□□□□□ -1.26
LIG3P49916 FP325313.1-201ENST00000638228 703 ntBASIC7.18□□□□□ -1.26
LIG3P49916 AC002115.2-201ENST00000640449 603 ntAPPRIS P1 TSL 5 BASIC7.18□□□□□ -1.26
LIG3P49916 TNPO1P2-201ENST00000426249 2665 ntBASIC7.18□□□□□ -1.26
LIG3P49916 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
LIG3P49916 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC7.18□□□□□ -1.26
LIG3P49916 MTND4P34-201ENST00000572715 1371 ntBASIC7.18□□□□□ -1.26
LIG3P49916 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
LIG3P49916 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC7.18□□□□□ -1.26
LIG3P49916 AC093297.3-201ENST00000607056 2517 ntBASIC7.18□□□□□ -1.26
LIG3P49916 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC7.17□□□□□ -1.26
LIG3P49916 AL022323.4-201ENST00000623980 13120 ntBASIC7.17□□□□□ -1.26
LIG3P49916 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
LIG3P49916 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC7.17□□□□□ -1.26
LIG3P49916 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC7.17□□□□□ -1.26
LIG3P49916 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
LIG3P49916 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
LIG3P49916 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
LIG3P49916 MAPK10-207ENST00000395166 3085 ntAPPRIS P2 TSL 2 BASIC7.17□□□□□ -1.26
LIG3P49916 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
LIG3P49916 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
LIG3P49916 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
LIG3P49916 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC7.17□□□□□ -1.26
LIG3P49916 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
LIG3P49916 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC7.17□□□□□ -1.26
LIG3P49916 ADAL-202ENST00000422466 3767 ntTSL 5 BASIC7.17□□□□□ -1.26
LIG3P49916 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC7.17□□□□□ -1.26
LIG3P49916 ENSA-207ENST00000362052 703 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms