Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC6.09□□□□□ -1.43
PTPN9P43378 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
PTPN9P43378 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC6.09□□□□□ -1.43
PTPN9P43378 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
PTPN9P43378 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC6.09□□□□□ -1.43
PTPN9P43378 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
PTPN9P43378 RNU6-760P-201ENST00000516078 97 ntBASIC6.09□□□□□ -1.43
PTPN9P43378 RN7SKP70-201ENST00000516655 271 ntBASIC6.09□□□□□ -1.43
PTPN9P43378 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC6.09□□□□□ -1.43
PTPN9P43378 KCTD9P6-201ENST00000522306 950 ntBASIC6.09□□□□□ -1.43
PTPN9P43378 MTND1P36-201ENST00000522384 936 ntBASIC6.09□□□□□ -1.43
PTPN9P43378 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC6.09□□□□□ -1.43
PTPN9P43378 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC6.09□□□□□ -1.43
PTPN9P43378 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC6.09□□□□□ -1.43
PTPN9P43378 AC126615.2-201ENST00000553003 515 ntBASIC6.09□□□□□ -1.43
PTPN9P43378 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC6.09□□□□□ -1.43
PTPN9P43378 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
PTPN9P43378 LINC00557-201ENST00000563184 1279 ntBASIC6.09□□□□□ -1.43
PTPN9P43378 AC020978.7-201ENST00000575953 1187 ntBASIC6.09□□□□□ -1.43
PTPN9P43378 AC134669.1-201ENST00000581275 672 ntBASIC6.09□□□□□ -1.43
PTPN9P43378 AC084036.1-201ENST00000609190 508 ntBASIC6.09□□□□□ -1.43
PTPN9P43378 AL138960.2-201ENST00000625145 535 ntBASIC6.09□□□□□ -1.43
PTPN9P43378 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC6.09□□□□□ -1.43
PTPN9P43378 AC119674.1-220ENST00000641502 1048 ntBASIC6.09□□□□□ -1.43
PTPN9P43378 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
PTPN9P43378 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
PTPN9P43378 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC6.09□□□□□ -1.43
PTPN9P43378 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.09□□□□□ -1.43
PTPN9P43378 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
PTPN9P43378 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC6.09□□□□□ -1.43
PTPN9P43378 AL132656.3-201ENST00000606384 1595 ntBASIC6.09□□□□□ -1.43
PTPN9P43378 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
PTPN9P43378 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.44
PTPN9P43378 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC6.09□□□□□ -1.44
PTPN9P43378 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC6.08□□□□□ -1.44
PTPN9P43378 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
PTPN9P43378 MFSD8-239ENST00000641590 2479 ntBASIC6.08□□□□□ -1.44
PTPN9P43378 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
PTPN9P43378 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
PTPN9P43378 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC6.08□□□□□ -1.44
PTPN9P43378 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
PTPN9P43378 AC117409.1-201ENST00000470499 1310 ntBASIC6.08□□□□□ -1.44
PTPN9P43378 EEF1A1P21-201ENST00000512363 1344 ntBASIC6.08□□□□□ -1.44
PTPN9P43378 KYNUP3-201ENST00000574386 1341 ntBASIC6.08□□□□□ -1.44
PTPN9P43378 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
PTPN9P43378 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
PTPN9P43378 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
PTPN9P43378 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
PTPN9P43378 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
PTPN9P43378 CXADRP1-201ENST00000398098 1095 ntBASIC6.08□□□□□ -1.44
PTPN9P43378 RN7SKP29-201ENST00000410957 272 ntBASIC6.08□□□□□ -1.44
PTPN9P43378 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC6.08□□□□□ -1.44
PTPN9P43378 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC6.08□□□□□ -1.44
PTPN9P43378 AC019205.1-201ENST00000421830 730 ntBASIC6.08□□□□□ -1.44
PTPN9P43378 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC6.08□□□□□ -1.44
PTPN9P43378 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC6.08□□□□□ -1.44
PTPN9P43378 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC6.08□□□□□ -1.44
PTPN9P43378 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC6.08□□□□□ -1.44
PTPN9P43378 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC6.08□□□□□ -1.44
PTPN9P43378 AC093166.4-201ENST00000457867 318 ntBASIC6.08□□□□□ -1.44
PTPN9P43378 AC093719.1-201ENST00000480427 441 ntBASIC6.08□□□□□ -1.44
PTPN9P43378 PDCL3P4-201ENST00000489621 720 ntBASIC6.08□□□□□ -1.44
PTPN9P43378 CBX1-205ENST00000495350 550 ntTSL 2 BASIC6.08□□□□□ -1.44
PTPN9P43378 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC6.08□□□□□ -1.44
PTPN9P43378 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC6.08□□□□□ -1.44
PTPN9P43378 AC060775.1-201ENST00000518241 520 ntBASIC6.08□□□□□ -1.44
PTPN9P43378 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC6.08□□□□□ -1.44
PTPN9P43378 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC6.08□□□□□ -1.44
PTPN9P43378 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC6.08□□□□□ -1.44
PTPN9P43378 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC6.08□□□□□ -1.44
PTPN9P43378 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
PTPN9P43378 DPPA3P2-202ENST00000557188 1219 ntBASIC6.08□□□□□ -1.44
PTPN9P43378 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC6.08□□□□□ -1.44
PTPN9P43378 AL499605.1-201ENST00000604628 403 ntBASIC6.08□□□□□ -1.44
PTPN9P43378 AL133481.2-203ENST00000607558 139 ntBASIC6.08□□□□□ -1.44
PTPN9P43378 CXADRP3-202ENST00000617265 1100 ntBASIC6.08□□□□□ -1.44
PTPN9P43378 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC6.08□□□□□ -1.44
PTPN9P43378 AC020978.9-201ENST00000624380 1141 ntBASIC6.08□□□□□ -1.44
PTPN9P43378 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC6.08□□□□□ -1.44
PTPN9P43378 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC6.08□□□□□ -1.44
PTPN9P43378 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC6.08□□□□□ -1.44
PTPN9P43378 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
PTPN9P43378 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
PTPN9P43378 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
PTPN9P43378 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
PTPN9P43378 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
PTPN9P43378 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC6.08□□□□□ -1.44
PTPN9P43378 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
PTPN9P43378 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
PTPN9P43378 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
PTPN9P43378 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
PTPN9P43378 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
PTPN9P43378 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
PTPN9P43378 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
PTPN9P43378 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC6.07□□□□□ -1.44
PTPN9P43378 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
PTPN9P43378 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
PTPN9P43378 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
PTPN9P43378 SLC9B1P1-201ENST00000331172 1337 ntBASIC6.07□□□□□ -1.44
PTPN9P43378 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 128 ms