Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL18A1P39060 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL18A1P39060 ZNF37A-201ENST00000351773 7027 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL18A1P39060 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC7.13□□□□□ -1.27
COL18A1P39060 CASP12-212ENST00000613512 1451 ntAPPRIS P5 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL18A1P39060 AC016745.2-201ENST00000608834 3443 ntBASIC7.13□□□□□ -1.27
COL18A1P39060 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC7.13□□□□□ -1.27
COL18A1P39060 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL18A1P39060 AC126755.2-208ENST00000327792 462 ntBASIC7.13□□□□□ -1.27
COL18A1P39060 AC138969.1-213ENST00000331436 462 ntBASIC7.13□□□□□ -1.27
COL18A1P39060 AC008072.1-201ENST00000434254 824 ntBASIC7.13□□□□□ -1.27
COL18A1P39060 AC009127.1-201ENST00000467090 155 ntBASIC7.13□□□□□ -1.27
COL18A1P39060 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC7.13□□□□□ -1.27
COL18A1P39060 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC7.13□□□□□ -1.27
COL18A1P39060 AL513327.3-201ENST00000602618 469 ntBASIC7.13□□□□□ -1.27
COL18A1P39060 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC7.13□□□□□ -1.27
COL18A1P39060 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC7.13□□□□□ -1.27
COL18A1P39060 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC7.13□□□□□ -1.27
COL18A1P39060 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL18A1P39060 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL18A1P39060 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL18A1P39060 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL18A1P39060 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC7.13□□□□□ -1.27
COL18A1P39060 AP004289.1-201ENST00000436307 2205 ntBASIC7.13□□□□□ -1.27
COL18A1P39060 IRF5P1-201ENST00000504852 2164 ntBASIC7.13□□□□□ -1.27
COL18A1P39060 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL18A1P39060 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL18A1P39060 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL18A1P39060 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL18A1P39060 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL18A1P39060 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC7.13□□□□□ -1.27
COL18A1P39060 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC7.13□□□□□ -1.27
COL18A1P39060 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL18A1P39060 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL18A1P39060 RNA5SP505-201ENST00000364748 108 ntBASIC7.13□□□□□ -1.27
COL18A1P39060 SNORD56.6-201ENST00000384569 71 ntBASIC7.13□□□□□ -1.27
COL18A1P39060 AL078599.1-201ENST00000402075 293 ntBASIC7.13□□□□□ -1.27
COL18A1P39060 RNF10P1-201ENST00000418589 369 ntBASIC7.13□□□□□ -1.27
COL18A1P39060 RNGTTP1-201ENST00000420965 728 ntBASIC7.13□□□□□ -1.27
COL18A1P39060 CRIP1P1-201ENST00000427567 185 ntBASIC7.13□□□□□ -1.27
COL18A1P39060 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC7.13□□□□□ -1.27
COL18A1P39060 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC7.13□□□□□ -1.27
COL18A1P39060 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC7.13□□□□□ -1.27
COL18A1P39060 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC7.13□□□□□ -1.27
COL18A1P39060 RPL31P44-201ENST00000447680 377 ntBASIC7.13□□□□□ -1.27
COL18A1P39060 RPL5P22-201ENST00000480199 884 ntBASIC7.13□□□□□ -1.27
COL18A1P39060 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC7.13□□□□□ -1.27
COL18A1P39060 IGHVII-44-2-201ENST00000517728 250 ntBASIC7.13□□□□□ -1.27
COL18A1P39060 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC7.13□□□□□ -1.27
COL18A1P39060 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC7.13□□□□□ -1.27
COL18A1P39060 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC7.13□□□□□ -1.27
COL18A1P39060 MAPK10-350ENST00000641777 965 ntBASIC7.13□□□□□ -1.27
COL18A1P39060 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL18A1P39060 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL18A1P39060 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL18A1P39060 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL18A1P39060 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC7.12□□□□□ -1.27
COL18A1P39060 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC7.12□□□□□ -1.27
COL18A1P39060 OR4F13P-202ENST00000560066 2054 ntBASIC7.12□□□□□ -1.27
COL18A1P39060 SVEP1-202ENST00000374469 12194 ntAPPRIS P2 TSL 5 BASIC7.12□□□□□ -1.27
COL18A1P39060 THAP12P4-201ENST00000528321 2266 ntBASIC7.12□□□□□ -1.27
COL18A1P39060 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
COL18A1P39060 CTNND1-201ENST00000358694 6135 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL18A1P39060 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC7.12□□□□□ -1.27
COL18A1P39060 AL008638.3-201ENST00000623027 5182 ntBASIC7.12□□□□□ -1.27
COL18A1P39060 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
COL18A1P39060 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL18A1P39060 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL18A1P39060 RN7SKP113-201ENST00000363891 295 ntBASIC7.12□□□□□ -1.27
COL18A1P39060 ADIG-201ENST00000373348 430 ntTSL 2 BASIC7.12□□□□□ -1.27
COL18A1P39060 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL18A1P39060 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC7.12□□□□□ -1.27
COL18A1P39060 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC7.12□□□□□ -1.27
COL18A1P39060 CEACAMP9-201ENST00000442990 513 ntBASIC7.12□□□□□ -1.27
COL18A1P39060 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC7.12□□□□□ -1.27
COL18A1P39060 AC093267.1-201ENST00000489176 961 ntBASIC7.12□□□□□ -1.27
COL18A1P39060 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL18A1P39060 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL18A1P39060 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC7.12□□□□□ -1.27
COL18A1P39060 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL18A1P39060 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC7.12□□□□□ -1.27
COL18A1P39060 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL18A1P39060 AC074050.1-201ENST00000563247 211 ntBASIC7.12□□□□□ -1.27
COL18A1P39060 AC068790.7-201ENST00000602347 528 ntBASIC7.12□□□□□ -1.27
COL18A1P39060 AC099494.2-201ENST00000623371 978 ntBASIC7.12□□□□□ -1.27
COL18A1P39060 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL18A1P39060 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL18A1P39060 FAM135B-204ENST00000395297 6962 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
COL18A1P39060 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC7.12□□□□□ -1.27
COL18A1P39060 HEMGN-201ENST00000259456 2192 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL18A1P39060 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC7.12□□□□□ -1.27
COL18A1P39060 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC7.12□□□□□ -1.27
COL18A1P39060 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC7.11□□□□□ -1.27
COL18A1P39060 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL18A1P39060 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL18A1P39060 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL18A1P39060 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC7.11□□□□□ -1.27
COL18A1P39060 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL18A1P39060 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC7.11□□□□□ -1.27
COL18A1P39060 AL353625.1-202ENST00000366273 571 ntBASIC7.11□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms