Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
BRCA1P38398 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
BRCA1P38398 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC6.67□□□□□ -1.34
BRCA1P38398 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC6.67□□□□□ -1.34
BRCA1P38398 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
BRCA1P38398 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
BRCA1P38398 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.67□□□□□ -1.34
BRCA1P38398 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
BRCA1P38398 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC6.67□□□□□ -1.34
BRCA1P38398 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
BRCA1P38398 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
BRCA1P38398 ZNF793-201ENST00000445217 6712 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
BRCA1P38398 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
BRCA1P38398 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC6.67□□□□□ -1.34
BRCA1P38398 MT-RNR2-201ENST00000387347 1559 ntBASIC6.67□□□□□ -1.34
BRCA1P38398 AC006058.1-201ENST00000568686 5067 ntBASIC6.67□□□□□ -1.34
BRCA1P38398 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC6.67□□□□□ -1.34
BRCA1P38398 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
BRCA1P38398 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC6.66□□□□□ -1.34
BRCA1P38398 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
BRCA1P38398 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
BRCA1P38398 AC079741.1-201ENST00000321498 212 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 RNU4-2-201ENST00000365668 141 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 AL078599.1-201ENST00000402075 293 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 AC073072.2-201ENST00000447425 348 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 Z92846.1-201ENST00000456203 268 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 RN7SL481P-201ENST00000477764 299 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 AL161747.1-201ENST00000480068 358 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC6.66□□□□□ -1.34
BRCA1P38398 IGHVII-44-2-201ENST00000517728 250 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 AL163952.1-202ENST00000569625 600 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 EIF3FP1-201ENST00000613970 806 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 MVP-219ENST00000629059 120 ntTSL 5 BASIC6.66□□□□□ -1.34
BRCA1P38398 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
BRCA1P38398 MYH15-201ENST00000273353 7074 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
BRCA1P38398 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
BRCA1P38398 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
BRCA1P38398 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
BRCA1P38398 AC007996.1-201ENST00000620414 2821 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
BRCA1P38398 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC6.66□□□□□ -1.34
BRCA1P38398 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
BRCA1P38398 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
BRCA1P38398 ZNF812P-201ENST00000457674 1694 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
BRCA1P38398 TRAPPC2-203ENST00000380579 2776 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
BRCA1P38398 MIPEPP2-201ENST00000422560 1819 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
BRCA1P38398 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC6.66□□□□□ -1.34
BRCA1P38398 NXF4-202ENST00000416098 1465 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
BRCA1P38398 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
BRCA1P38398 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC6.66□□□□□ -1.34
BRCA1P38398 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
BRCA1P38398 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.66□□□□□ -1.34
BRCA1P38398 THAP12P4-201ENST00000528321 2266 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
BRCA1P38398 MAPK10-263ENST00000641052 4307 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 DBIP1-201ENST00000401435 260 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 TMEM183AP1-205ENST00000432739 290 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 PRPF38AP2-201ENST00000438179 851 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 RPL7AP28-201ENST00000464513 571 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC6.66□□□□□ -1.34
BRCA1P38398 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC6.66□□□□□ -1.34
BRCA1P38398 UBE2FP2-201ENST00000566646 462 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 MIR4737-201ENST00000583979 81 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 AL392048.1-201ENST00000613946 534 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 MIR6780A-201ENST00000615089 68 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
BRCA1P38398 AC074101.1-201ENST00000637861 241 ntBASIC6.66□□□□□ -1.34
BRCA1P38398 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
BRCA1P38398 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
BRCA1P38398 AC007620.2-201ENST00000600539 1697 ntTSL 5 BASIC6.66□□□□□ -1.34
BRCA1P38398 RIF1-205ENST00000444746 7897 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
BRCA1P38398 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
BRCA1P38398 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
BRCA1P38398 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.66□□□□□ -1.34
BRCA1P38398 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC6.65□□□□□ -1.34
BRCA1P38398 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
BRCA1P38398 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC6.65□□□□□ -1.34
BRCA1P38398 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
BRCA1P38398 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.34
BRCA1P38398 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC6.65□□□□□ -1.34
BRCA1P38398 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.65□□□□□ -1.34
BRCA1P38398 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
BRCA1P38398 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.34
BRCA1P38398 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
BRCA1P38398 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.34
BRCA1P38398 NANOGP9-201ENST00000439890 892 ntBASIC6.65□□□□□ -1.34
BRCA1P38398 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC6.65□□□□□ -1.34
BRCA1P38398 AC068522.1-201ENST00000482895 345 ntBASIC6.65□□□□□ -1.34
BRCA1P38398 BTF3P13-201ENST00000513224 490 ntBASIC6.65□□□□□ -1.34
BRCA1P38398 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC6.65□□□□□ -1.34
BRCA1P38398 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
BRCA1P38398 DHFRP1-201ENST00000579682 559 ntBASIC6.65□□□□□ -1.34
BRCA1P38398 RN7SL690P-201ENST00000582087 240 ntBASIC6.65□□□□□ -1.34
BRCA1P38398 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC6.65□□□□□ -1.34
BRCA1P38398 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC6.65□□□□□ -1.34
BRCA1P38398 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC6.65□□□□□ -1.34
BRCA1P38398 AC092747.4-201ENST00000620519 1861 ntBASIC6.65□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 164.1 ms