Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 VN1R31P-201ENST00000417498 730 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC6.85□□□□□ -1.31
SMARCA1P28370 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC6.85□□□□□ -1.31
SMARCA1P28370 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC6.85□□□□□ -1.31
SMARCA1P28370 RAB9AP5-201ENST00000437794 597 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 EIF5AP4-201ENST00000441206 465 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 RAB9AP2-201ENST00000443911 597 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 AL603882.1-201ENST00000463059 681 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 AC094085.1-201ENST00000468914 584 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 RPS17P15-201ENST00000475609 349 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC6.85□□□□□ -1.31
SMARCA1P28370 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SMARCA1P28370 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC6.85□□□□□ -1.31
SMARCA1P28370 GAPDHP71-201ENST00000511530 1003 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC6.85□□□□□ -1.31
SMARCA1P28370 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC6.85□□□□□ -1.31
SMARCA1P28370 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC6.85□□□□□ -1.31
SMARCA1P28370 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC6.85□□□□□ -1.31
SMARCA1P28370 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
SMARCA1P28370 AC006530.1-201ENST00000555980 571 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC6.85□□□□□ -1.31
SMARCA1P28370 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC6.85□□□□□ -1.31
SMARCA1P28370 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC6.85□□□□□ -1.31
SMARCA1P28370 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC6.85□□□□□ -1.31
SMARCA1P28370 MIR4760-201ENST00000585040 80 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC6.85□□□□□ -1.31
SMARCA1P28370 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC6.85□□□□□ -1.31
SMARCA1P28370 COX6CP7-201ENST00000597056 208 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC6.85□□□□□ -1.31
SMARCA1P28370 AC034229.4-201ENST00000607861 441 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 uc_338.26-201ENST00000612659 160 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 AC016957.2-201ENST00000616998 848 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 AC074276.2-201ENST00000619891 348 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 AC010872.1-201ENST00000624225 675 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC6.85□□□□□ -1.31
SMARCA1P28370 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC6.85□□□□□ -1.31
SMARCA1P28370 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.85□□□□□ -1.31
SMARCA1P28370 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC6.85□□□□□ -1.31
SMARCA1P28370 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SMARCA1P28370 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
SMARCA1P28370 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SMARCA1P28370 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.85□□□□□ -1.31
SMARCA1P28370 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC6.85□□□□□ -1.31
SMARCA1P28370 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC6.85□□□□□ -1.31
SMARCA1P28370 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.85□□□□□ -1.31
SMARCA1P28370 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SMARCA1P28370 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SMARCA1P28370 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SMARCA1P28370 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC6.84□□□□□ -1.31
SMARCA1P28370 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC6.84□□□□□ -1.31
SMARCA1P28370 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.84□□□□□ -1.31
SMARCA1P28370 PDZK1P1-202ENST00000425209 1350 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SMARCA1P28370 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.84□□□□□ -1.31
SMARCA1P28370 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SMARCA1P28370 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SMARCA1P28370 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SMARCA1P28370 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SMARCA1P28370 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
SMARCA1P28370 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SMARCA1P28370 RN7SKP15-201ENST00000364742 309 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 RNU1-59P-201ENST00000364829 162 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SMARCA1P28370 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC6.84□□□□□ -1.31
SMARCA1P28370 OR7E101P-201ENST00000400428 513 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 AMZ2P2-201ENST00000406819 1057 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 NACAP7-201ENST00000407371 609 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC6.84□□□□□ -1.31
SMARCA1P28370 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC6.84□□□□□ -1.31
SMARCA1P28370 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC6.84□□□□□ -1.31
SMARCA1P28370 FTO-202ENST00000431610 707 ntTSL 3 BASIC6.84□□□□□ -1.31
SMARCA1P28370 HNRNPA1P18-201ENST00000433537 927 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 AL663074.2-201ENST00000440621 479 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 RNF2P1-201ENST00000442955 1010 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC6.84□□□□□ -1.31
SMARCA1P28370 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC6.84□□□□□ -1.31
SMARCA1P28370 LDHBP2-201ENST00000456969 1005 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 PFN1P6-201ENST00000476786 399 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC6.84□□□□□ -1.31
SMARCA1P28370 AC099521.1-201ENST00000482557 334 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 NPM1P21-201ENST00000513394 762 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC6.84□□□□□ -1.31
SMARCA1P28370 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SMARCA1P28370 CETN3-206ENST00000522864 738 ntTSL 3 BASIC6.84□□□□□ -1.31
SMARCA1P28370 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC6.84□□□□□ -1.31
SMARCA1P28370 CASP5-209ENST00000531367 879 ntTSL 5 BASIC6.84□□□□□ -1.31
SMARCA1P28370 AC007346.2-201ENST00000564816 892 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC6.84□□□□□ -1.31
SMARCA1P28370 RPL12P48-201ENST00000605620 304 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 MKKS-203ENST00000609375 882 ntTSL 2 BASIC6.84□□□□□ -1.31
SMARCA1P28370 U1.25-201ENST00000614085 162 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 U1.34-201ENST00000618578 162 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 U1.31-201ENST00000620022 160 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 AL049777.1-201ENST00000622740 518 ntBASIC6.84□□□□□ -1.31
SMARCA1P28370 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SMARCA1P28370 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SMARCA1P28370 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.31
SMARCA1P28370 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.84□□□□□ -1.31
SMARCA1P28370 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC6.84□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 146.8 ms