Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AP004609.2-201ENST00000532177 190 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 AL121594.2-201ENST00000541658 472 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 RPA2P1-201ENST00000556557 721 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HLA-DMBP28068 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 ZNF322P1-201ENST00000568013 1209 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 HIRAP1-201ENST00000605318 787 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 AC145423.1-201ENST00000605712 336 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 Z95327.3-201ENST00000610385 572 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 AC024884.1-201ENST00000620583 399 ntBASIC4.37□□□□□ -1.71
HLA-DMBP28068 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HLA-DMBP28068 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HLA-DMBP28068 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC4.37□□□□□ -1.71
HLA-DMBP28068 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
HLA-DMBP28068 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HLA-DMBP28068 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HLA-DMBP28068 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC4.37□□□□□ -1.71
HLA-DMBP28068 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HLA-DMBP28068 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HLA-DMBP28068 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HLA-DMBP28068 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
HLA-DMBP28068 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 RNFT1P3-201ENST00000340898 1052 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HLA-DMBP28068 SUGT1P2-201ENST00000379452 992 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 RPL11P3-201ENST00000395256 523 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 AC096921.1-201ENST00000411661 375 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 AL158827.1-201ENST00000416300 391 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 RPS3P2-201ENST00000421346 701 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 NPM1P19-201ENST00000450070 712 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 CFL1P4-201ENST00000451536 498 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 HLA-DPA3-207ENST00000454398 229 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 OR5H7P-201ENST00000514084 930 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 OR8Q1P-201ENST00000526467 655 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 MIR6809-201ENST00000612189 116 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 AL139099.4-201ENST00000614802 114 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HLA-DMBP28068 AL035661.1-201ENST00000620459 1144 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 FO681491.1-202ENST00000623392 737 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 AL355480.1-201ENST00000629041 99 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HLA-DMBP28068 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC4.36□□□□□ -1.71
HLA-DMBP28068 AL158152.1-201ENST00000602652 1435 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HLA-DMBP28068 MTCO1P7-201ENST00000419523 1542 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 AC099654.3-201ENST00000447087 1546 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HLA-DMBP28068 AF287957.1-201ENST00000607368 1595 ntBASIC4.36□□□□□ -1.71
HLA-DMBP28068 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-DMBP28068 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 RNA5SP326-201ENST00000363209 110 ntBASIC4.35□□□□□ -1.71
HLA-DMBP28068 RNA5SP510-201ENST00000364697 99 ntBASIC4.35□□□□□ -1.71
HLA-DMBP28068 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
HLA-DMBP28068 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms