Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HMGA1P17096 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HMGA1P17096 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HMGA1P17096 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HMGA1P17096 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HMGA1P17096 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC5.76□□□□□ -1.49
HMGA1P17096 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HMGA1P17096 AL121886.1-201ENST00000358609 435 ntBASIC5.76□□□□□ -1.49
HMGA1P17096 RNU1-19P-201ENST00000363306 165 ntBASIC5.76□□□□□ -1.49
HMGA1P17096 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HMGA1P17096 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.76□□□□□ -1.49
HMGA1P17096 MIR223-201ENST00000385204 110 ntBASIC5.76□□□□□ -1.49
HMGA1P17096 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
HMGA1P17096 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.76□□□□□ -1.49
HMGA1P17096 RN7SKP273-201ENST00000411392 314 ntBASIC5.76□□□□□ -1.49
HMGA1P17096 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.76□□□□□ -1.49
HMGA1P17096 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC5.76□□□□□ -1.49
HMGA1P17096 SRSF1P1-201ENST00000424058 520 ntBASIC5.76□□□□□ -1.49
HMGA1P17096 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.76□□□□□ -1.49
HMGA1P17096 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC5.76□□□□□ -1.49
HMGA1P17096 ATP5LP5-201ENST00000483050 299 ntBASIC5.76□□□□□ -1.49
HMGA1P17096 AC004815.1-201ENST00000484185 331 ntBASIC5.76□□□□□ -1.49
HMGA1P17096 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.76□□□□□ -1.49
HMGA1P17096 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC5.76□□□□□ -1.49
HMGA1P17096 AC004825.1-201ENST00000555068 586 ntBASIC5.76□□□□□ -1.49
HMGA1P17096 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC5.76□□□□□ -1.49
HMGA1P17096 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.76□□□□□ -1.49
HMGA1P17096 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HMGA1P17096 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC5.76□□□□□ -1.49
HMGA1P17096 H3F3BP2-201ENST00000583907 357 ntBASIC5.76□□□□□ -1.49
HMGA1P17096 WBP1LP8-201ENST00000617401 327 ntBASIC5.76□□□□□ -1.49
HMGA1P17096 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HMGA1P17096 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.76□□□□□ -1.49
HMGA1P17096 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.76□□□□□ -1.49
HMGA1P17096 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.76□□□□□ -1.49
HMGA1P17096 SAMMSON-227ENST00000642114 1199 ntBASIC5.76□□□□□ -1.49
HMGA1P17096 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.76□□□□□ -1.49
HMGA1P17096 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
HMGA1P17096 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC5.76□□□□□ -1.49
HMGA1P17096 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.76□□□□□ -1.49
HMGA1P17096 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.76□□□□□ -1.49
HMGA1P17096 DMD-211ENST00000378707 7410 ntTSL 5 BASIC5.76□□□□□ -1.49
HMGA1P17096 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HMGA1P17096 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HMGA1P17096 HSPD1P7-201ENST00000447985 1686 ntBASIC5.75□□□□□ -1.49
HMGA1P17096 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HMGA1P17096 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
HMGA1P17096 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HMGA1P17096 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.75□□□□□ -1.49
HMGA1P17096 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HMGA1P17096 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.75□□□□□ -1.49
HMGA1P17096 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
HMGA1P17096 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.75□□□□□ -1.49
HMGA1P17096 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
HMGA1P17096 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
HMGA1P17096 AC005294.1-201ENST00000355509 281 ntBASIC5.75□□□□□ -1.49
HMGA1P17096 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HMGA1P17096 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HMGA1P17096 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.75□□□□□ -1.49
HMGA1P17096 RPSAP35-201ENST00000413753 818 ntBASIC5.75□□□□□ -1.49
HMGA1P17096 MTND4LP17-201ENST00000414607 293 ntBASIC5.75□□□□□ -1.49
HMGA1P17096 DSTNP5-201ENST00000427921 523 ntBASIC5.75□□□□□ -1.49
HMGA1P17096 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC5.75□□□□□ -1.49
HMGA1P17096 KRT8P51-201ENST00000438938 274 ntBASIC5.75□□□□□ -1.49
HMGA1P17096 AL035090.1-201ENST00000454835 332 ntBASIC5.75□□□□□ -1.49
HMGA1P17096 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC5.75□□□□□ -1.49
HMGA1P17096 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.75□□□□□ -1.49
HMGA1P17096 RN7SL222P-201ENST00000476452 299 ntBASIC5.75□□□□□ -1.49
HMGA1P17096 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC5.75□□□□□ -1.49
HMGA1P17096 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.75□□□□□ -1.49
HMGA1P17096 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.75□□□□□ -1.49
HMGA1P17096 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.75□□□□□ -1.49
HMGA1P17096 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.75□□□□□ -1.49
HMGA1P17096 RBM22P1-201ENST00000578589 1214 ntBASIC5.75□□□□□ -1.49
HMGA1P17096 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.75□□□□□ -1.49
HMGA1P17096 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
HMGA1P17096 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.75□□□□□ -1.49
HMGA1P17096 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HMGA1P17096 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.75□□□□□ -1.49
HMGA1P17096 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HMGA1P17096 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HMGA1P17096 AC013268.3-201ENST00000262716 2324 ntBASIC5.75□□□□□ -1.49
HMGA1P17096 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC5.75□□□□□ -1.49
HMGA1P17096 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC5.75□□□□□ -1.49
HMGA1P17096 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HMGA1P17096 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.74□□□□□ -1.49
HMGA1P17096 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HMGA1P17096 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC5.74□□□□□ -1.49
HMGA1P17096 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HMGA1P17096 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.74□□□□□ -1.49
HMGA1P17096 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
HMGA1P17096 AL133388.1-201ENST00000404509 287 ntBASIC5.74□□□□□ -1.49
HMGA1P17096 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.74□□□□□ -1.49
HMGA1P17096 AC007394.1-201ENST00000421941 531 ntBASIC5.74□□□□□ -1.49
HMGA1P17096 PTMAP6-201ENST00000439110 327 ntBASIC5.74□□□□□ -1.49
HMGA1P17096 RN7SL447P-201ENST00000494711 245 ntBASIC5.74□□□□□ -1.49
HMGA1P17096 OR5M14P-201ENST00000506803 618 ntBASIC5.74□□□□□ -1.49
HMGA1P17096 RNA5SP116-201ENST00000516132 98 ntBASIC5.74□□□□□ -1.49
HMGA1P17096 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.74□□□□□ -1.49
HMGA1P17096 ASB8-215ENST00000540782 659 ntTSL 3 BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms