Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC6.99□□□□□ -1.29
COL6A1P12109 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC6.99□□□□□ -1.29
COL6A1P12109 AL355578.1-201ENST00000607405 1328 ntBASIC6.99□□□□□ -1.29
COL6A1P12109 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL6A1P12109 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
COL6A1P12109 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL6A1P12109 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL6A1P12109 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC6.98□□□□□ -1.29
COL6A1P12109 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC6.98□□□□□ -1.29
COL6A1P12109 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL6A1P12109 MGP-201ENST00000228938 694 ntTSL 3 BASIC6.98□□□□□ -1.29
COL6A1P12109 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
COL6A1P12109 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL6A1P12109 RNA5SP132-201ENST00000364725 118 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 RNU6-650P-201ENST00000365658 111 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC6.98□□□□□ -1.29
COL6A1P12109 AC245060.4-201ENST00000413293 1121 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 AC107081.1-201ENST00000414975 361 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 AC093155.2-201ENST00000420734 937 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC6.98□□□□□ -1.29
COL6A1P12109 BX119321.1-201ENST00000428912 797 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC6.98□□□□□ -1.29
COL6A1P12109 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC6.98□□□□□ -1.29
COL6A1P12109 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL6A1P12109 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC6.98□□□□□ -1.29
COL6A1P12109 AC091544.1-201ENST00000484702 348 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 AC118465.1-201ENST00000513820 1271 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC6.98□□□□□ -1.29
COL6A1P12109 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC6.98□□□□□ -1.29
COL6A1P12109 AP003355.1-201ENST00000518956 587 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC6.98□□□□□ -1.29
COL6A1P12109 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC6.98□□□□□ -1.29
COL6A1P12109 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL6A1P12109 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC6.98□□□□□ -1.29
COL6A1P12109 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC6.98□□□□□ -1.29
COL6A1P12109 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC6.98□□□□□ -1.29
COL6A1P12109 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC6.98□□□□□ -1.29
COL6A1P12109 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC6.98□□□□□ -1.29
COL6A1P12109 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC6.98□□□□□ -1.29
COL6A1P12109 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC6.98□□□□□ -1.29
COL6A1P12109 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC6.98□□□□□ -1.29
COL6A1P12109 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC6.98□□□□□ -1.29
COL6A1P12109 AC020916.2-201ENST00000591242 360 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 ZNF92P3-201ENST00000596594 954 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 AP001160.4-201ENST00000596971 382 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 COX6CP7-201ENST00000597056 208 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 SUMO2P15-201ENST00000604285 278 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 AL355802.4-201ENST00000607635 548 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 AL136295.6-201ENST00000610486 658 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL6A1P12109 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC6.98□□□□□ -1.29
COL6A1P12109 AC116667.2-201ENST00000641075 823 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL6A1P12109 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC6.98□□□□□ -1.29
COL6A1P12109 AC073429.2-201ENST00000569694 1444 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC6.98□□□□□ -1.29
COL6A1P12109 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC6.98□□□□□ -1.29
COL6A1P12109 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC6.98□□□□□ -1.29
COL6A1P12109 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL6A1P12109 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.29
COL6A1P12109 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL6A1P12109 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC6.98□□□□□ -1.29
COL6A1P12109 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL6A1P12109 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL6A1P12109 MAPK10-287ENST00000641217 3037 ntBASIC6.98□□□□□ -1.29
COL6A1P12109 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL6A1P12109 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC6.97□□□□□ -1.29
COL6A1P12109 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC6.97□□□□□ -1.29
COL6A1P12109 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 AC062022.1-201ENST00000451026 1684 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC6.97□□□□□ -1.29
COL6A1P12109 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
COL6A1P12109 RNU6-618P-201ENST00000363518 112 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC6.97□□□□□ -1.29
COL6A1P12109 RNU1-46P-201ENST00000384425 164 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 RPS3AP2-201ENST00000407190 754 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.97□□□□□ -1.29
COL6A1P12109 AL355433.1-201ENST00000422804 300 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC6.97□□□□□ -1.29
COL6A1P12109 BX323845.3-201ENST00000428215 527 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 TRBV26OR9-2-201ENST00000432077 293 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 AL392003.1-201ENST00000434394 243 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 OR3D1P-201ENST00000438288 955 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 CDY12P-201ENST00000440679 1015 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC6.97□□□□□ -1.29
COL6A1P12109 CDY13P-201ENST00000445813 1015 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 AL009048.1-201ENST00000450437 298 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC6.97□□□□□ -1.29
COL6A1P12109 AC108157.1-201ENST00000510511 539 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC6.97□□□□□ -1.29
COL6A1P12109 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms