Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AL391361.1-201ENST00000405580 489 ntBASIC5.58□□□□□ -1.52
HOXC4P09017 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.58□□□□□ -1.52
HOXC4P09017 USP24P1-201ENST00000433802 779 ntBASIC5.58□□□□□ -1.52
HOXC4P09017 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.58□□□□□ -1.52
HOXC4P09017 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.58□□□□□ -1.52
HOXC4P09017 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
HOXC4P09017 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
HOXC4P09017 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
HOXC4P09017 EIF1P7-201ENST00000487533 337 ntBASIC5.58□□□□□ -1.52
HOXC4P09017 PDCL3P4-201ENST00000489621 720 ntBASIC5.58□□□□□ -1.52
HOXC4P09017 DUTP1-201ENST00000493631 470 ntBASIC5.58□□□□□ -1.52
HOXC4P09017 DUTP7-201ENST00000507982 486 ntBASIC5.58□□□□□ -1.52
HOXC4P09017 SCARNA21.2-201ENST00000516600 166 ntBASIC5.58□□□□□ -1.52
HOXC4P09017 AP001284.1-201ENST00000528393 2118 ntBASIC5.58□□□□□ -1.52
HOXC4P09017 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.58□□□□□ -1.52
HOXC4P09017 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.58□□□□□ -1.52
HOXC4P09017 DPPA3P2-202ENST00000557188 1219 ntBASIC5.58□□□□□ -1.52
HOXC4P09017 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.58□□□□□ -1.52
HOXC4P09017 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.58□□□□□ -1.52
HOXC4P09017 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC5.58□□□□□ -1.52
HOXC4P09017 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.58□□□□□ -1.52
HOXC4P09017 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.58□□□□□ -1.52
HOXC4P09017 PPATP2-201ENST00000605635 508 ntBASIC5.58□□□□□ -1.52
HOXC4P09017 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.58□□□□□ -1.52
HOXC4P09017 AC010245.2-201ENST00000606908 1167 ntBASIC5.58□□□□□ -1.52
HOXC4P09017 AL035661.1-201ENST00000620459 1144 ntBASIC5.58□□□□□ -1.52
HOXC4P09017 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC5.58□□□□□ -1.52
HOXC4P09017 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
HOXC4P09017 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
HOXC4P09017 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC5.58□□□□□ -1.52
HOXC4P09017 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.58□□□□□ -1.52
HOXC4P09017 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
HOXC4P09017 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
HOXC4P09017 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
HOXC4P09017 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
HOXC4P09017 AL158152.1-201ENST00000602652 1435 ntBASIC5.57□□□□□ -1.52
HOXC4P09017 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
HOXC4P09017 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.57□□□□□ -1.52
HOXC4P09017 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXC4P09017 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.57□□□□□ -1.52
HOXC4P09017 RNU4-2-201ENST00000365668 141 ntBASIC5.57□□□□□ -1.52
HOXC4P09017 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.57□□□□□ -1.52
HOXC4P09017 CYP2AC1P-201ENST00000407830 1173 ntBASIC5.57□□□□□ -1.52
HOXC4P09017 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
HOXC4P09017 AC006335.2-201ENST00000437993 330 ntBASIC5.57□□□□□ -1.52
HOXC4P09017 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXC4P09017 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.57□□□□□ -1.52
HOXC4P09017 RN7SL583P-201ENST00000475692 287 ntBASIC5.57□□□□□ -1.52
HOXC4P09017 RPS7P6-201ENST00000485777 579 ntBASIC5.57□□□□□ -1.52
HOXC4P09017 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXC4P09017 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.57□□□□□ -1.52
HOXC4P09017 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.57□□□□□ -1.52
HOXC4P09017 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.57□□□□□ -1.52
HOXC4P09017 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.57□□□□□ -1.52
HOXC4P09017 MRPS21P7-201ENST00000566937 238 ntBASIC5.57□□□□□ -1.52
HOXC4P09017 HIRAP1-201ENST00000605318 787 ntBASIC5.57□□□□□ -1.52
HOXC4P09017 CGA-206ENST00000630630 832 ntTSL 2 BASIC5.57□□□□□ -1.52
HOXC4P09017 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXC4P09017 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC5.57□□□□□ -1.52
HOXC4P09017 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC5.57□□□□□ -1.52
HOXC4P09017 AL442128.2-201ENST00000620246 1824 ntBASIC5.57□□□□□ -1.52
HOXC4P09017 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXC4P09017 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
HOXC4P09017 AC022164.1-201ENST00000568767 2673 ntBASIC5.57□□□□□ -1.52
HOXC4P09017 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
HOXC4P09017 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC5.57□□□□□ -1.52
HOXC4P09017 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXC4P09017 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXC4P09017 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.56□□□□□ -1.52
HOXC4P09017 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.56□□□□□ -1.52
HOXC4P09017 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXC4P09017 AC087516.1-201ENST00000561236 2428 ntBASIC5.56□□□□□ -1.52
HOXC4P09017 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.56□□□□□ -1.52
HOXC4P09017 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXC4P09017 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXC4P09017 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXC4P09017 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.56□□□□□ -1.52
HOXC4P09017 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
HOXC4P09017 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXC4P09017 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXC4P09017 RN7SKP162-201ENST00000363605 345 ntBASIC5.56□□□□□ -1.52
HOXC4P09017 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.56□□□□□ -1.52
HOXC4P09017 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC5.56□□□□□ -1.52
HOXC4P09017 AC012075.1-201ENST00000436549 580 ntBASIC5.56□□□□□ -1.52
HOXC4P09017 AL390119.1-201ENST00000440329 312 ntBASIC5.56□□□□□ -1.52
HOXC4P09017 AL596266.1-201ENST00000448132 400 ntBASIC5.56□□□□□ -1.52
HOXC4P09017 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXC4P09017 AP000547.1-201ENST00000454360 617 ntBASIC5.56□□□□□ -1.52
HOXC4P09017 AC017007.3-201ENST00000479865 435 ntBASIC5.56□□□□□ -1.52
HOXC4P09017 RN7SL184P-201ENST00000488308 297 ntBASIC5.56□□□□□ -1.52
HOXC4P09017 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.56□□□□□ -1.52
HOXC4P09017 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXC4P09017 BX510359.5-201ENST00000515651 304 ntBASIC5.56□□□□□ -1.52
HOXC4P09017 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXC4P09017 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.56□□□□□ -1.52
HOXC4P09017 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXC4P09017 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXC4P09017 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXC4P09017 MIR4433B-201ENST00000581329 102 ntBASIC5.56□□□□□ -1.52
HOXC4P09017 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 144.4 ms