Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 OR5AM1P-201ENST00000532136 1032 ntBASIC5.61□□□□□ -1.51
TREX1Q9NSU2 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.61□□□□□ -1.51
TREX1Q9NSU2 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC5.61□□□□□ -1.51
TREX1Q9NSU2 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC5.61□□□□□ -1.51
TREX1Q9NSU2 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.61□□□□□ -1.51
TREX1Q9NSU2 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TREX1Q9NSU2 AL139124.1-201ENST00000609123 421 ntBASIC5.61□□□□□ -1.51
TREX1Q9NSU2 AC087565.3-203ENST00000641018 837 ntBASIC5.61□□□□□ -1.51
TREX1Q9NSU2 OR4G1P-202ENST00000641173 1788 ntBASIC5.61□□□□□ -1.51
TREX1Q9NSU2 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
TREX1Q9NSU2 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.61□□□□□ -1.51
TREX1Q9NSU2 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TREX1Q9NSU2 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
TREX1Q9NSU2 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TREX1Q9NSU2 LINC01963-201ENST00000562038 3148 ntBASIC5.61□□□□□ -1.51
TREX1Q9NSU2 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TREX1Q9NSU2 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TREX1Q9NSU2 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 AP002512.4-202ENST00000641599 4530 ntBASIC5.6□□□□□ -1.51
TREX1Q9NSU2 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 OR52B3P-201ENST00000314715 928 ntBASIC5.6□□□□□ -1.51
TREX1Q9NSU2 RNA5SP394-201ENST00000364216 119 ntBASIC5.6□□□□□ -1.51
TREX1Q9NSU2 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 CXADRP1-201ENST00000398098 1095 ntBASIC5.6□□□□□ -1.51
TREX1Q9NSU2 HMGB1P20-201ENST00000402555 677 ntBASIC5.6□□□□□ -1.51
TREX1Q9NSU2 VN1R12P-201ENST00000403778 876 ntBASIC5.6□□□□□ -1.51
TREX1Q9NSU2 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 NPM1P18-201ENST00000434232 732 ntBASIC5.6□□□□□ -1.51
TREX1Q9NSU2 NDUFB4P8-201ENST00000435351 367 ntBASIC5.6□□□□□ -1.51
TREX1Q9NSU2 MTND2P40-201ENST00000436718 841 ntBASIC5.6□□□□□ -1.51
TREX1Q9NSU2 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 AC087672.1-201ENST00000479876 766 ntBASIC5.6□□□□□ -1.51
TREX1Q9NSU2 SUMO2P4-201ENST00000504193 276 ntBASIC5.6□□□□□ -1.51
TREX1Q9NSU2 AC021106.1-201ENST00000509020 1058 ntBASIC5.6□□□□□ -1.51
TREX1Q9NSU2 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 AL138895.2-201ENST00000603019 178 ntBASIC5.6□□□□□ -1.51
TREX1Q9NSU2 AC007786.3-201ENST00000615154 596 ntBASIC5.6□□□□□ -1.51
TREX1Q9NSU2 AC025574.2-201ENST00000615621 514 ntBASIC5.6□□□□□ -1.51
TREX1Q9NSU2 CXADRP3-202ENST00000617265 1100 ntBASIC5.6□□□□□ -1.51
TREX1Q9NSU2 RNA5SP439-201ENST00000617595 124 ntBASIC5.6□□□□□ -1.51
TREX1Q9NSU2 AC021766.1-201ENST00000624404 741 ntBASIC5.6□□□□□ -1.51
TREX1Q9NSU2 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TREX1Q9NSU2 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 DNM1P47-203ENST00000571780 12667 ntBASIC5.59□□□□□ -1.51
TREX1Q9NSU2 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 SAMM50P1-201ENST00000455403 1399 ntBASIC5.59□□□□□ -1.51
TREX1Q9NSU2 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 AC092451.3-201ENST00000625067 1343 ntBASIC5.59□□□□□ -1.51
TREX1Q9NSU2 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 U3.28-201ENST00000391249 210 ntBASIC5.59□□□□□ -1.51
TREX1Q9NSU2 AL009179.1-201ENST00000406085 265 ntBASIC5.59□□□□□ -1.51
TREX1Q9NSU2 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.59□□□□□ -1.51
TREX1Q9NSU2 AC009963.4-201ENST00000448535 339 ntBASIC5.59□□□□□ -1.51
TREX1Q9NSU2 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.59□□□□□ -1.51
TREX1Q9NSU2 RN7SL188P-201ENST00000469842 285 ntBASIC5.59□□□□□ -1.51
TREX1Q9NSU2 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 AC097486.1-201ENST00000515331 210 ntBASIC5.59□□□□□ -1.51
TREX1Q9NSU2 RNU6-615P-201ENST00000516065 106 ntBASIC5.59□□□□□ -1.51
TREX1Q9NSU2 TRIM51DP-201ENST00000529746 596 ntBASIC5.59□□□□□ -1.51
TREX1Q9NSU2 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
TREX1Q9NSU2 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms