Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 NDUFB2-215ENST00000482954 544 ntTSL 3 BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 RN7SL868P-201ENST00000485915 303 ntBASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 AC008967.1-201ENST00000504843 163 ntBASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 AC021146.8-201ENST00000507455 733 ntBASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 RN7SKP233-201ENST00000517005 110 ntBASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 AC027541.1-201ENST00000519306 485 ntTSL 3 BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 AL137230.1-202ENST00000553996 420 ntTSL 2 BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 AC004825.1-201ENST00000555068 586 ntBASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 AC016839.1-201ENST00000578162 867 ntBASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 IGLJCOR18-201ENST00000584002 424 ntBASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 RPS27AP19-201ENST00000597285 458 ntBASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 IGKV2OR2-7-201ENST00000604652 304 ntBASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 AC124312.4-201ENST00000605533 310 ntBASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 AC012557.2-201ENST00000605919 418 ntBASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 AC131235.4-201ENST00000609288 620 ntBASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 RMDN2-AS1-210ENST00000630021 1053 ntTSL 5 BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 RMST-210ENST00000640149 2844 ntTSL 5 BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 JAML-206ENST00000526620 1383 ntAPPRIS ALT2 TSL 2 BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 DZANK1-203ENST00000357236 3739 ntAPPRIS ALT2 TSL 5 BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC7.81□□□□□ -1.16
TRAIPQ9BWF2 AC244502.1-201ENST00000514473 1951 ntTSL 2 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 NPIPB5-205ENST00000424340 3801 ntAPPRIS P2 TSL 1 (best) BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AL117339.4-201ENST00000608335 7063 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 OR4K17-203ENST00000641633 5068 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 MT-CO1-201ENST00000361624 1542 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 LINC02447-201ENST00000499242 1500 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 RNU6-1066P-201ENST00000363573 105 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 RNU6-1300P-201ENST00000391046 108 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AL451046.1-201ENST00000406097 534 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 RN7SKP268-201ENST00000411107 316 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 RNA5SP280-201ENST00000411230 115 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 SETP15-201ENST00000412724 337 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 ETDB-201ENST00000423661 681 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 ETDB-202ENST00000426364 388 ntAPPRIS P1 TSL 3 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 ETDA-201ENST00000427686 607 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 BLOC1S2P1-201ENST00000428431 301 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AL159174.1-201ENST00000438267 811 ntTSL 3 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 TXNP5-201ENST00000441043 315 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 ETDA-202ENST00000454551 388 ntAPPRIS P1 TSL 3 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AC015724.1-201ENST00000478577 156 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 RPL21P6-201ENST00000479171 504 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AL591122.1-201ENST00000487348 492 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 RN7SL612P-201ENST00000497704 295 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 RNU6-1225P-201ENST00000516336 65 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 RN7SKP11-201ENST00000517018 287 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 ST13P6-201ENST00000522430 1102 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AC090193.1-202ENST00000524355 566 ntTSL 4 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AP001189.2-201ENST00000527320 189 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AC084824.1-201ENST00000550917 1005 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AC116553.2-201ENST00000564203 463 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AC110603.1-201ENST00000580645 468 ntTSL 3 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 MIR4999-201ENST00000585029 91 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AC011468.2-202ENST00000594362 579 ntTSL 5 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AL590229.1-201ENST00000603497 542 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AL592221.1-201ENST00000605266 382 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AP001962.1-201ENST00000624114 559 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms