Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.76□□□□□ -1.49
VPS35Q96QK1 AC027243.2-201ENST00000602530 724 ntBASIC5.76□□□□□ -1.49
VPS35Q96QK1 AP001267.4-201ENST00000602598 545 ntBASIC5.76□□□□□ -1.49
VPS35Q96QK1 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS35Q96QK1 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS35Q96QK1 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS35Q96QK1 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
VPS35Q96QK1 AL137141.1-201ENST00000624622 4836 ntBASIC5.76□□□□□ -1.49
VPS35Q96QK1 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS35Q96QK1 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS35Q96QK1 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
VPS35Q96QK1 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.76□□□□□ -1.49
VPS35Q96QK1 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS35Q96QK1 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
VPS35Q96QK1 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
VPS35Q96QK1 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS35Q96QK1 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
VPS35Q96QK1 AC117409.1-201ENST00000470499 1310 ntBASIC5.75□□□□□ -1.49
VPS35Q96QK1 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC5.75□□□□□ -1.49
VPS35Q96QK1 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.75□□□□□ -1.49
VPS35Q96QK1 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.75□□□□□ -1.49
VPS35Q96QK1 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
VPS35Q96QK1 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS35Q96QK1 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS35Q96QK1 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
VPS35Q96QK1 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
VPS35Q96QK1 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS35Q96QK1 MIR375-201ENST00000362103 64 ntBASIC5.75□□□□□ -1.49
VPS35Q96QK1 RN7SKP78-201ENST00000364711 318 ntBASIC5.75□□□□□ -1.49
VPS35Q96QK1 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
VPS35Q96QK1 AC244033.1-201ENST00000426826 870 ntBASIC5.75□□□□□ -1.49
VPS35Q96QK1 BX119904.3-201ENST00000428194 957 ntBASIC5.75□□□□□ -1.49
VPS35Q96QK1 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC5.75□□□□□ -1.49
VPS35Q96QK1 GAPDHP34-201ENST00000432112 823 ntBASIC5.75□□□□□ -1.49
VPS35Q96QK1 USP24P1-201ENST00000433802 779 ntBASIC5.75□□□□□ -1.49
VPS35Q96QK1 RPL12P18-201ENST00000437175 325 ntBASIC5.75□□□□□ -1.49
VPS35Q96QK1 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS35Q96QK1 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS35Q96QK1 AC105384.2-201ENST00000508433 640 ntBASIC5.75□□□□□ -1.49
VPS35Q96QK1 AC090568.1-201ENST00000509499 856 ntBASIC5.75□□□□□ -1.49
VPS35Q96QK1 AC074255.1-201ENST00000511259 501 ntBASIC5.75□□□□□ -1.49
VPS35Q96QK1 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
VPS35Q96QK1 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
VPS35Q96QK1 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS35Q96QK1 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS35Q96QK1 MIR4310-201ENST00000582950 57 ntBASIC5.75□□□□□ -1.49
VPS35Q96QK1 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS35Q96QK1 AC015982.1-201ENST00000608113 465 ntBASIC5.75□□□□□ -1.49
VPS35Q96QK1 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS35Q96QK1 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS35Q96QK1 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
VPS35Q96QK1 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
VPS35Q96QK1 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS35Q96QK1 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
VPS35Q96QK1 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS35Q96QK1 AC020633.1-201ENST00000468439 2247 ntBASIC5.75□□□□□ -1.49
VPS35Q96QK1 CDY11P-201ENST00000447168 1651 ntBASIC5.75□□□□□ -1.49
VPS35Q96QK1 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.75□□□□□ -1.49
VPS35Q96QK1 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS35Q96QK1 OR13C1P-202ENST00000641378 2919 ntBASIC5.75□□□□□ -1.49
VPS35Q96QK1 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS35Q96QK1 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VPS35Q96QK1 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 AC106872.5-201ENST00000508856 1416 ntBASIC5.74□□□□□ -1.49
VPS35Q96QK1 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VPS35Q96QK1 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VPS35Q96QK1 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS35Q96QK1 RN7SKP81-201ENST00000365603 331 ntBASIC5.74□□□□□ -1.49
VPS35Q96QK1 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS35Q96QK1 EEF1B2P8-201ENST00000414101 671 ntBASIC5.74□□□□□ -1.49
VPS35Q96QK1 VN1R3-201ENST00000418822 919 ntBASIC5.74□□□□□ -1.49
VPS35Q96QK1 AC092651.1-201ENST00000426110 312 ntBASIC5.74□□□□□ -1.49
VPS35Q96QK1 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 AL022331.1-201ENST00000429025 477 ntBASIC5.74□□□□□ -1.49
VPS35Q96QK1 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 RPL23AP19-201ENST00000436229 369 ntBASIC5.74□□□□□ -1.49
VPS35Q96QK1 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 NPM1P19-201ENST00000450070 712 ntBASIC5.74□□□□□ -1.49
VPS35Q96QK1 RSU1P1-201ENST00000453416 441 ntBASIC5.74□□□□□ -1.49
VPS35Q96QK1 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 TRIM51DP-201ENST00000529746 596 ntBASIC5.74□□□□□ -1.49
VPS35Q96QK1 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 AC126615.2-201ENST00000553003 515 ntBASIC5.74□□□□□ -1.49
VPS35Q96QK1 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VPS35Q96QK1 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS35Q96QK1 NANOGP3-201ENST00000605855 286 ntBASIC5.74□□□□□ -1.49
VPS35Q96QK1 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VPS35Q96QK1 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms