Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 FOLH1-213ENST00000533034 2225 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 ACTG2-203ENST00000409731 1413 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 PRLR-213ENST00000514088 1440 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 PPP6R3-206ENST00000524904 4292 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 RBPJP2-201ENST00000618187 1444 ntBASIC5.82□□□□□ -1.48
CCDC140Q96MF4 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
CCDC140Q96MF4 GAPVD1-201ENST00000265956 2667 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 BBOX1-201ENST00000263182 1886 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AL357556.1-201ENST00000421884 1388 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 PDZK1P1-202ENST00000425209 1350 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 EEF1A1P5-201ENST00000436459 1389 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 ZNF37BP-203ENST00000452306 1352 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 ZNF611-202ENST00000453741 4380 ntTSL 4 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 ZSCAN9-207ENST00000531979 1601 ntAPPRIS P3 TSL 2 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC011008.2-201ENST00000624866 3352 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 KIF4A-201ENST00000374403 4348 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 HIPK1-211ENST00000626993 8016 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 LINC01359-204ENST00000447748 2804 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 EZH2-203ENST00000460911 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 BX664727.3-202ENST00000421686 1761 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 ZNF214-201ENST00000278314 2681 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 CCAR1-218ENST00000630771 4540 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AL512646.1-201ENST00000269395 1077 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 OR9G4-201ENST00000302957 984 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 RNY4P24-201ENST00000362735 96 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 RNA5SP448-201ENST00000363151 111 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 RNU6-216P-201ENST00000363282 104 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 Y_RNA.248-201ENST00000364501 109 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 RNU6-867P-201ENST00000364956 107 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 GAGE12E-201ENST00000381698 520 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 RNU6-1151P-201ENST00000384684 107 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 CAV1-204ENST00000393470 598 ntTSL 4 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AL450338.1-201ENST00000407987 512 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 RN7SKP56-201ENST00000410513 331 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 RPL17P12-201ENST00000413391 526 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 HMGB1P11-201ENST00000413899 637 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 RPL21P32-201ENST00000419877 477 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AL389915.1-201ENST00000422463 466 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AL021707.2-201ENST00000431924 786 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 PIP5K1P2-201ENST00000437005 1120 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 RPSAP49-201ENST00000445182 886 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 RPL7P31-201ENST00000450192 724 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 SLC31A1P1-201ENST00000451221 567 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC139769.1-201ENST00000471224 1001 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AP000797.1-201ENST00000478870 387 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC013828.1-201ENST00000481845 158 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 MTAPP1-201ENST00000489154 819 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 LINC02024-202ENST00000493545 483 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC109464.2-201ENST00000510242 943 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AF131216.2-201ENST00000512316 564 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 GCSHP1-201ENST00000512554 484 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 RNU6-583P-201ENST00000516012 92 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 IGHV3-32-201ENST00000519182 355 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC027309.2-201ENST00000520566 192 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AP000880.1-202ENST00000526487 588 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC069360.1-202ENST00000533941 557 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC019209.3-201ENST00000536949 772 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC140118.1-201ENST00000539209 532 ntTSL 4 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 PPIAL4D-201ENST00000544708 495 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC023080.1-201ENST00000551663 931 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 SLFN5-203ENST00000592325 1225 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC067959.1-201ENST00000604334 379 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC069304.2-201ENST00000605154 435 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC022001.1-201ENST00000605193 268 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 HNF4A-AS1-202ENST00000609152 413 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC244153.1-204ENST00000615582 401 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC243571.1-201ENST00000615743 478 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC009283.1-201ENST00000615852 645 ntBASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 151.5 ms