Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC6.46□□□□□ -1.38
USP39Q53GS9 BMPR1APS2-201ENST00000527904 1012 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC6.46□□□□□ -1.38
USP39Q53GS9 AC079905.1-201ENST00000549280 475 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC6.46□□□□□ -1.38
USP39Q53GS9 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC6.46□□□□□ -1.38
USP39Q53GS9 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC6.46□□□□□ -1.38
USP39Q53GS9 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC6.46□□□□□ -1.38
USP39Q53GS9 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC6.46□□□□□ -1.38
USP39Q53GS9 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC6.46□□□□□ -1.38
USP39Q53GS9 AC007599.1-201ENST00000568688 1174 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 AC067852.5-201ENST00000589299 310 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC6.46□□□□□ -1.38
USP39Q53GS9 PCNAP1-202ENST00000595299 752 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC6.46□□□□□ -1.38
USP39Q53GS9 AC010620.1-201ENST00000601088 1102 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.46□□□□□ -1.38
USP39Q53GS9 AL356986.1-201ENST00000604085 341 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 AL450270.1-201ENST00000606160 391 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 AP001153.1-201ENST00000641024 338 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 AL596275.2-208ENST00000641192 594 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
USP39Q53GS9 ZNF658B-201ENST00000602828 3408 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
USP39Q53GS9 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
USP39Q53GS9 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC6.46□□□□□ -1.38
USP39Q53GS9 MTCO1P25-201ENST00000414449 1799 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
USP39Q53GS9 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC6.46□□□□□ -1.38
USP39Q53GS9 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
USP39Q53GS9 OLMALINC-203ENST00000641087 3779 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.45□□□□□ -1.38
USP39Q53GS9 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC6.45□□□□□ -1.38
USP39Q53GS9 EEF1A1P9-201ENST00000514975 1383 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.45□□□□□ -1.38
USP39Q53GS9 OFD1P17-201ENST00000437639 3018 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC6.45□□□□□ -1.38
USP39Q53GS9 AC130360.2-201ENST00000533477 1556 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 MFSD8-220ENST00000641243 1422 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
USP39Q53GS9 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
USP39Q53GS9 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
USP39Q53GS9 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
USP39Q53GS9 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
USP39Q53GS9 SNORA51.1-201ENST00000363243 140 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 RN7SKP69-201ENST00000365390 305 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC6.45□□□□□ -1.38
USP39Q53GS9 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
USP39Q53GS9 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
USP39Q53GS9 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
USP39Q53GS9 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC6.45□□□□□ -1.38
USP39Q53GS9 ATP5F1P2-201ENST00000398143 760 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 AL512422.1-201ENST00000407033 553 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 RN7SKP281-201ENST00000410472 352 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 RN7SKP108-201ENST00000411367 328 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC6.45□□□□□ -1.38
USP39Q53GS9 AL158827.1-201ENST00000416300 391 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC6.45□□□□□ -1.38
USP39Q53GS9 AC009518.2-201ENST00000418056 731 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC6.45□□□□□ -1.38
USP39Q53GS9 AL035246.1-201ENST00000433554 1255 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC6.45□□□□□ -1.38
USP39Q53GS9 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC6.45□□□□□ -1.38
USP39Q53GS9 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC6.45□□□□□ -1.38
USP39Q53GS9 RN7SL643P-201ENST00000471845 291 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC6.45□□□□□ -1.38
USP39Q53GS9 RPL12P31-201ENST00000478433 450 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 RN7SL101P-201ENST00000496350 279 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 SNORA58-201ENST00000505219 137 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 OR7E99P-201ENST00000505750 922 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 AC025458.1-201ENST00000506046 166 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 AC008494.2-201ENST00000514544 370 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC6.45□□□□□ -1.38
USP39Q53GS9 RNU6-334P-201ENST00000517072 102 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC6.45□□□□□ -1.38
USP39Q53GS9 IGHV3-57-201ENST00000520143 280 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC6.45□□□□□ -1.38
USP39Q53GS9 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC6.45□□□□□ -1.38
USP39Q53GS9 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
USP39Q53GS9 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC6.45□□□□□ -1.38
USP39Q53GS9 AL132857.1-201ENST00000555180 708 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC6.45□□□□□ -1.38
USP39Q53GS9 TPRX1P1-201ENST00000557620 319 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC6.45□□□□□ -1.38
USP39Q53GS9 PRELID3BP3-201ENST00000584963 545 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC6.45□□□□□ -1.38
USP39Q53GS9 AL080312.2-201ENST00000613001 630 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
USP39Q53GS9 AL445528.2-201ENST00000620582 470 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 AC006927.2-201ENST00000639256 389 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 AC012078.1-201ENST00000405035 1646 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 AP002370.1-201ENST00000528055 1602 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
USP39Q53GS9 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
USP39Q53GS9 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC6.45□□□□□ -1.38
USP39Q53GS9 PARP4P1-201ENST00000435945 2337 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
USP39Q53GS9 ICE2P1-201ENST00000512800 1849 ntBASIC6.45□□□□□ -1.38
USP39Q53GS9 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC6.45□□□□□ -1.38
USP39Q53GS9 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC6.45□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms