Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
PDLIM3Q53GG5 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
PDLIM3Q53GG5 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
PDLIM3Q53GG5 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AL022311.1-201ENST00000623726 19416 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 OR7A2P-201ENST00000304105 930 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 RNA5SP242-201ENST00000364171 118 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 RNU6-1320P-201ENST00000390838 107 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 RNU6-1269P-201ENST00000391139 107 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AC092865.3-201ENST00000425390 1026 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AC092106.2-201ENST00000436597 487 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 COL11A2P1-205ENST00000441798 676 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AL161636.2-201ENST00000445179 927 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 RBMY2TP-201ENST00000451162 947 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 RPS27AP3-201ENST00000453803 454 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AL022319.1-201ENST00000458183 1167 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 RNU6-599P-201ENST00000459383 107 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 RNU6-1193P-201ENST00000459461 107 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 SLC25A51P1-201ENST00000468432 871 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AC007998.1-201ENST00000474156 672 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AC025181.1-201ENST00000477507 416 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AL035690.1-201ENST00000490892 383 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AC027369.2-201ENST00000528030 440 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 NPIPB14P-203ENST00000532298 987 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AC009120.3-201ENST00000563335 499 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 MIR3189-201ENST00000578735 73 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 MIR3176-201ENST00000582210 90 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 GLYATL1P2-202ENST00000588046 902 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AL021368.3-201ENST00000607119 578 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 FAM72A-208ENST00000607379 1139 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 RNU6-368P-201ENST00000620928 107 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 RNU6-538P-201ENST00000622329 107 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AC006840.1-201ENST00000623069 542 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 OR51B2-201ENST00000624187 939 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 TTC39DP-201ENST00000416781 1688 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 AC107021.2-201ENST00000567714 2095 ntBASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
PDLIM3Q53GG5 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 SAGE3P-201ENST00000619800 1635 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 RNA5SP284-201ENST00000384547 118 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 SNORA40.4-201ENST00000390971 128 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 RNU11-6P-201ENST00000391127 133 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AL121977.1-201ENST00000401636 979 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 RAB9AP4-201ENST00000415230 609 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AC066692.1-201ENST00000421721 457 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 AC007394.1-201ENST00000421941 531 ntBASIC5.13□□□□□ -1.59
PDLIM3Q53GG5 MTND6P12-201ENST00000428247 522 ntBASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms