Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC7.24□□□□□ -1.25
SOX4Q06945 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC7.24□□□□□ -1.25
SOX4Q06945 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC7.24□□□□□ -1.25
SOX4Q06945 CDH17-203ENST00000450165 2625 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 ZNF849P-201ENST00000594711 1566 ntBASIC7.24□□□□□ -1.25
SOX4Q06945 NBPF3-202ENST00000318249 3591 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 AC244100.3-202ENST00000617328 1721 ntTSL 2 BASIC7.24□□□□□ -1.25
SOX4Q06945 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
SOX4Q06945 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC7.24□□□□□ -1.25
SOX4Q06945 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
SOX4Q06945 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
SOX4Q06945 PPWD1-214ENST00000535264 2195 ntTSL 2 BASIC7.23□□□□□ -1.25
SOX4Q06945 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC7.23□□□□□ -1.25
SOX4Q06945 NPIPB5-205ENST00000424340 3801 ntAPPRIS P2 TSL 1 (best) BASIC7.23□□□□□ -1.25
SOX4Q06945 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
SOX4Q06945 AC093278.2-201ENST00000564956 2485 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC7.23□□□□□ -1.25
SOX4Q06945 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC7.23□□□□□ -1.25
SOX4Q06945 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC7.23□□□□□ -1.25
SOX4Q06945 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
SOX4Q06945 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
SOX4Q06945 PPIAP24-201ENST00000328558 471 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
SOX4Q06945 RNU6-797P-201ENST00000363101 109 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC7.23□□□□□ -1.25
SOX4Q06945 RNU6-413P-201ENST00000384115 107 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 SNORA26.8-201ENST00000391306 124 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 CHMP1B2P-201ENST00000399581 597 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 PGBD4P8-201ENST00000412993 562 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 NPM1P36-201ENST00000415681 835 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC7.23□□□□□ -1.25
SOX4Q06945 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC7.23□□□□□ -1.25
SOX4Q06945 LINC00575-201ENST00000426551 910 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
SOX4Q06945 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC7.23□□□□□ -1.25
SOX4Q06945 GAPDHP19-201ENST00000431768 1005 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC7.23□□□□□ -1.25
SOX4Q06945 ARMC4P1-201ENST00000438905 707 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 MTCYBP34-201ENST00000439552 670 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 SNRPBP1-201ENST00000443634 282 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC7.23□□□□□ -1.25
SOX4Q06945 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC7.23□□□□□ -1.25
SOX4Q06945 BUD31P2-201ENST00000449374 300 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 RHEBP2-201ENST00000450289 600 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 CCNJP1-201ENST00000450600 1149 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
SOX4Q06945 SUN3-208ENST00000453192 801 ntTSL 5 BASIC7.23□□□□□ -1.25
SOX4Q06945 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC7.23□□□□□ -1.25
SOX4Q06945 RNU6-956P-201ENST00000458868 103 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 AC021074.2-201ENST00000468434 172 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 AC104763.1-201ENST00000475274 360 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 AC069528.1-202ENST00000482888 637 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 AC090058.1-201ENST00000498788 435 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 ARL4AP1-201ENST00000503220 705 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 AC021087.2-201ENST00000504656 1203 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
SOX4Q06945 AC112184.1-201ENST00000505179 312 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 AC109458.1-201ENST00000508858 316 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 AC021146.7-201ENST00000509604 775 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC7.23□□□□□ -1.25
SOX4Q06945 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC7.23□□□□□ -1.25
SOX4Q06945 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC7.23□□□□□ -1.25
SOX4Q06945 AP001804.1-201ENST00000526868 919 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC7.23□□□□□ -1.25
SOX4Q06945 AC016957.1-201ENST00000534895 309 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC7.23□□□□□ -1.25
SOX4Q06945 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC7.23□□□□□ -1.25
SOX4Q06945 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC7.23□□□□□ -1.25
SOX4Q06945 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC7.23□□□□□ -1.25
SOX4Q06945 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC7.23□□□□□ -1.25
SOX4Q06945 AC026956.1-201ENST00000558741 396 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC7.23□□□□□ -1.25
SOX4Q06945 ANP32BP1-202ENST00000568553 737 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC7.23□□□□□ -1.25
SOX4Q06945 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC7.23□□□□□ -1.25
SOX4Q06945 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC7.23□□□□□ -1.25
SOX4Q06945 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC7.23□□□□□ -1.25
SOX4Q06945 AC245052.7-201ENST00000601161 359 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC7.23□□□□□ -1.25
SOX4Q06945 AP002345.2-201ENST00000609961 904 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC7.23□□□□□ -1.25
SOX4Q06945 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC7.23□□□□□ -1.25
SOX4Q06945 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC7.23□□□□□ -1.25
SOX4Q06945 CASC19-212ENST00000641153 1287 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
SOX4Q06945 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
SOX4Q06945 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC7.23□□□□□ -1.25
SOX4Q06945 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC7.23□□□□□ -1.25
SOX4Q06945 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC7.23□□□□□ -1.25
SOX4Q06945 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
SOX4Q06945 ERVW-1-202ENST00000603053 2763 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
SOX4Q06945 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
SOX4Q06945 AP005139.1-201ENST00000580702 1647 ntBASIC7.23□□□□□ -1.25
SOX4Q06945 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC7.23□□□□□ -1.25
SOX4Q06945 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
SOX4Q06945 APP-206ENST00000359726 3294 ntTSL 2 BASIC7.23□□□□□ -1.25
SOX4Q06945 ALG13-224ENST00000610588 4175 ntTSL 2 BASIC7.23□□□□□ -1.25
SOX4Q06945 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC7.23□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 121.8 ms