Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC073575.2-201ENST00000614212 627 ntBASIC7.16□□□□□ -1.26
COL18A1P39060 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC7.16□□□□□ -1.26
COL18A1P39060 MIR7641-1-201ENST00000627518 61 ntBASIC7.16□□□□□ -1.26
COL18A1P39060 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL18A1P39060 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL18A1P39060 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC7.16□□□□□ -1.26
COL18A1P39060 EEF1A1P33-201ENST00000554413 1362 ntBASIC7.16□□□□□ -1.26
COL18A1P39060 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
COL18A1P39060 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL18A1P39060 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC7.16□□□□□ -1.26
COL18A1P39060 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC7.16□□□□□ -1.26
COL18A1P39060 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC7.16□□□□□ -1.26
COL18A1P39060 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC7.16□□□□□ -1.26
COL18A1P39060 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL18A1P39060 HSPD1P8-201ENST00000400121 1658 ntBASIC7.16□□□□□ -1.26
COL18A1P39060 CHD2-201ENST00000394196 9363 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
COL18A1P39060 ZNFX1-204ENST00000396105 7371 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL18A1P39060 AC009948.3-201ENST00000603415 1798 ntBASIC7.16□□□□□ -1.26
COL18A1P39060 HSPA8P14-201ENST00000552265 1805 ntBASIC7.16□□□□□ -1.26
COL18A1P39060 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
COL18A1P39060 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL18A1P39060 ZNF585A-202ENST00000356958 6822 ntTSL 2 BASIC7.16□□□□□ -1.26
COL18A1P39060 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL18A1P39060 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL18A1P39060 AL590139.1-201ENST00000416267 400 ntBASIC7.15□□□□□ -1.26
COL18A1P39060 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC7.15□□□□□ -1.26
COL18A1P39060 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC7.15□□□□□ -1.26
COL18A1P39060 AC002075.1-201ENST00000457396 676 ntBASIC7.15□□□□□ -1.26
COL18A1P39060 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC7.15□□□□□ -1.26
COL18A1P39060 ATP5LP5-201ENST00000483050 299 ntBASIC7.15□□□□□ -1.26
COL18A1P39060 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC7.15□□□□□ -1.26
COL18A1P39060 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC7.15□□□□□ -1.26
COL18A1P39060 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC7.15□□□□□ -1.26
COL18A1P39060 YWHABP2-201ENST00000540201 713 ntBASIC7.15□□□□□ -1.26
COL18A1P39060 H3F3BP2-201ENST00000583907 357 ntBASIC7.15□□□□□ -1.26
COL18A1P39060 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC7.15□□□□□ -1.26
COL18A1P39060 AC009237.13-201ENST00000603193 276 ntBASIC7.15□□□□□ -1.26
COL18A1P39060 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC7.15□□□□□ -1.26
COL18A1P39060 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.26
COL18A1P39060 SLC7A2-201ENST00000004531 7560 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL18A1P39060 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL18A1P39060 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC7.15□□□□□ -1.26
COL18A1P39060 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL18A1P39060 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL18A1P39060 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC7.15□□□□□ -1.26
COL18A1P39060 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL18A1P39060 VWA5A-205ENST00000456829 4388 ntAPPRIS P4 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL18A1P39060 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC7.15□□□□□ -1.26
COL18A1P39060 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL18A1P39060 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC7.15□□□□□ -1.26
COL18A1P39060 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL18A1P39060 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.26
COL18A1P39060 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC7.15□□□□□ -1.26
COL18A1P39060 RN7SKP149-201ENST00000363008 344 ntBASIC7.15□□□□□ -1.27
COL18A1P39060 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC7.15□□□□□ -1.27
COL18A1P39060 AC091390.1-201ENST00000433904 331 ntBASIC7.15□□□□□ -1.27
COL18A1P39060 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC7.15□□□□□ -1.27
COL18A1P39060 RPS29P33-201ENST00000456717 146 ntBASIC7.15□□□□□ -1.27
COL18A1P39060 GTF2F2P1-201ENST00000511083 675 ntBASIC7.15□□□□□ -1.27
COL18A1P39060 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC7.15□□□□□ -1.27
COL18A1P39060 AC021006.3-201ENST00000530771 192 ntBASIC7.15□□□□□ -1.27
COL18A1P39060 AC005341.1-201ENST00000571086 708 ntBASIC7.15□□□□□ -1.27
COL18A1P39060 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.27
COL18A1P39060 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC7.15□□□□□ -1.27
COL18A1P39060 AC087283.1-201ENST00000604029 1074 ntBASIC7.15□□□□□ -1.27
COL18A1P39060 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC7.15□□□□□ -1.27
COL18A1P39060 NAA60-237ENST00000615865 326 ntTSL 5 BASIC7.15□□□□□ -1.27
COL18A1P39060 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
COL18A1P39060 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC7.15□□□□□ -1.27
COL18A1P39060 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC7.15□□□□□ -1.27
COL18A1P39060 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
COL18A1P39060 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.27
COL18A1P39060 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC7.15□□□□□ -1.27
COL18A1P39060 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC7.15□□□□□ -1.27
COL18A1P39060 AC006600.2-201ENST00000624834 2506 ntBASIC7.15□□□□□ -1.27
COL18A1P39060 UTY-209ENST00000537580 6490 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
COL18A1P39060 FAM199X-202ENST00000493442 7457 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL18A1P39060 CASC19-221ENST00000641309 1382 ntBASIC7.14□□□□□ -1.27
COL18A1P39060 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL18A1P39060 U3.3-201ENST00000362986 216 ntBASIC7.14□□□□□ -1.27
COL18A1P39060 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL18A1P39060 AC016397.1-201ENST00000412463 242 ntBASIC7.14□□□□□ -1.27
COL18A1P39060 COX6B1P1-201ENST00000415962 213 ntBASIC7.14□□□□□ -1.27
COL18A1P39060 RN7SL423P-201ENST00000486202 304 ntBASIC7.14□□□□□ -1.27
COL18A1P39060 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
COL18A1P39060 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC7.14□□□□□ -1.27
COL18A1P39060 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
COL18A1P39060 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC7.14□□□□□ -1.27
COL18A1P39060 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC7.14□□□□□ -1.27
COL18A1P39060 AP003789.1-201ENST00000617737 605 ntBASIC7.14□□□□□ -1.27
COL18A1P39060 AC074101.1-201ENST00000637861 241 ntBASIC7.14□□□□□ -1.27
COL18A1P39060 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC7.14□□□□□ -1.27
COL18A1P39060 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC7.14□□□□□ -1.27
COL18A1P39060 JAKMIP2-201ENST00000265272 6001 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL18A1P39060 AC068870.1-201ENST00000563737 2455 ntBASIC7.14□□□□□ -1.27
COL18A1P39060 PPARGC1B-201ENST00000309241 10568 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL18A1P39060 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC7.14□□□□□ -1.27
COL18A1P39060 NIPBL-201ENST00000282516 10435 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL18A1P39060 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL18A1P39060 FAM186A-204ENST00000543111 8200 ntAPPRIS ALT2 TSL 5 BASIC7.14□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms