Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX2P35548 AC021506.1-201ENST00000581971 597 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX2P35548 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC6.12□□□□□ -1.43
MSX2P35548 DEFB131E-202ENST00000602581 683 ntBASIC6.12□□□□□ -1.43
MSX2P35548 AC080078.2-201ENST00000603766 501 ntBASIC6.12□□□□□ -1.43
MSX2P35548 AC067838.1-201ENST00000606064 577 ntBASIC6.12□□□□□ -1.43
MSX2P35548 AC135507.1-201ENST00000607214 561 ntBASIC6.12□□□□□ -1.43
MSX2P35548 AC012640.3-201ENST00000607847 430 ntBASIC6.12□□□□□ -1.43
MSX2P35548 AC008432.1-201ENST00000615912 1320 ntBASIC6.12□□□□□ -1.43
MSX2P35548 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
MSX2P35548 AC096708.4-201ENST00000620563 552 ntBASIC6.12□□□□□ -1.43
MSX2P35548 DAPL1-204ENST00000621326 671 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
MSX2P35548 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX2P35548 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX2P35548 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
MSX2P35548 OR8B1P-202ENST00000641132 1178 ntBASIC6.12□□□□□ -1.43
MSX2P35548 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX2P35548 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX2P35548 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
MSX2P35548 AL359263.1-201ENST00000441188 2796 ntBASIC6.12□□□□□ -1.43
MSX2P35548 TMEM267-201ENST00000397080 2338 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
MSX2P35548 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
MSX2P35548 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
MSX2P35548 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
MSX2P35548 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
MSX2P35548 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
MSX2P35548 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
MSX2P35548 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC6.11□□□□□ -1.43
MSX2P35548 PYHIN1-204ENST00000392252 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
MSX2P35548 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
MSX2P35548 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
MSX2P35548 TRIM53CP-201ENST00000531490 1354 ntBASIC6.11□□□□□ -1.43
MSX2P35548 RNU1-59P-201ENST00000364829 162 ntBASIC6.11□□□□□ -1.43
MSX2P35548 RNA5SP355-201ENST00000365317 135 ntBASIC6.11□□□□□ -1.43
MSX2P35548 SNORA30B-201ENST00000365319 129 ntBASIC6.11□□□□□ -1.43
MSX2P35548 U3.14-201ENST00000365363 227 ntBASIC6.11□□□□□ -1.43
MSX2P35548 CXADRP1-201ENST00000398098 1095 ntBASIC6.11□□□□□ -1.43
MSX2P35548 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC6.11□□□□□ -1.43
MSX2P35548 RAB9AP4-201ENST00000415230 609 ntBASIC6.11□□□□□ -1.43
MSX2P35548 AC093107.1-201ENST00000422772 609 ntBASIC6.11□□□□□ -1.43
MSX2P35548 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX2P35548 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX2P35548 MIR181A1HG-202ENST00000432296 930 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX2P35548 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC6.11□□□□□ -1.43
MSX2P35548 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX2P35548 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC6.11□□□□□ -1.43
MSX2P35548 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX2P35548 AL157884.3-201ENST00000448273 1184 ntBASIC6.11□□□□□ -1.43
MSX2P35548 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX2P35548 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC6.11□□□□□ -1.43
MSX2P35548 LINC01105-205ENST00000450794 580 ntTSL 4 BASIC6.11□□□□□ -1.43
MSX2P35548 RPL26P30-201ENST00000453533 435 ntBASIC6.11□□□□□ -1.43
MSX2P35548 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC6.11□□□□□ -1.43
MSX2P35548 OR7E22P-201ENST00000478335 1035 ntBASIC6.11□□□□□ -1.43
MSX2P35548 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX2P35548 TPT1P3-201ENST00000492841 512 ntBASIC6.11□□□□□ -1.43
MSX2P35548 AC022206.1-201ENST00000495947 347 ntBASIC6.11□□□□□ -1.43
MSX2P35548 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX2P35548 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX2P35548 AC010625.1-201ENST00000511296 403 ntBASIC6.11□□□□□ -1.43
MSX2P35548 NPM1P21-201ENST00000513394 762 ntBASIC6.11□□□□□ -1.43
MSX2P35548 EGFLAM-211ENST00000514476 676 ntTSL 2 BASIC6.11□□□□□ -1.43
MSX2P35548 AC117532.1-201ENST00000514638 323 ntBASIC6.11□□□□□ -1.43
MSX2P35548 BUD31P1-201ENST00000521828 359 ntBASIC6.11□□□□□ -1.43
MSX2P35548 IGHVIII-25-1-201ENST00000522143 241 ntBASIC6.11□□□□□ -1.43
MSX2P35548 AP000926.4-201ENST00000527351 454 ntBASIC6.11□□□□□ -1.43
MSX2P35548 AP000916.1-201ENST00000533869 835 ntBASIC6.11□□□□□ -1.43
MSX2P35548 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
MSX2P35548 TMEM132D-AS1-207ENST00000542535 442 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
MSX2P35548 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC6.11□□□□□ -1.43
MSX2P35548 INO80-AS1-202ENST00000560178 444 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX2P35548 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC6.11□□□□□ -1.43
MSX2P35548 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX2P35548 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX2P35548 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
MSX2P35548 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC6.11□□□□□ -1.43
MSX2P35548 AC068790.6-201ENST00000602558 258 ntBASIC6.11□□□□□ -1.43
MSX2P35548 MRPS35P3-201ENST00000603189 709 ntBASIC6.11□□□□□ -1.43
MSX2P35548 AC002069.2-201ENST00000603580 883 ntBASIC6.11□□□□□ -1.43
MSX2P35548 AC004492.1-201ENST00000607036 742 ntBASIC6.11□□□□□ -1.43
MSX2P35548 AL161931.1-201ENST00000612768 246 ntBASIC6.11□□□□□ -1.43
MSX2P35548 U1.25-201ENST00000614085 162 ntBASIC6.11□□□□□ -1.43
MSX2P35548 U1.34-201ENST00000618578 162 ntBASIC6.11□□□□□ -1.43
MSX2P35548 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
MSX2P35548 U1.31-201ENST00000620022 160 ntBASIC6.11□□□□□ -1.43
MSX2P35548 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX2P35548 AC098679.5-201ENST00000624394 571 ntBASIC6.11□□□□□ -1.43
MSX2P35548 AL390318.1-201ENST00000624564 687 ntBASIC6.11□□□□□ -1.43
MSX2P35548 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
MSX2P35548 AC007671.2-201ENST00000637344 619 ntBASIC6.11□□□□□ -1.43
MSX2P35548 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC6.11□□□□□ -1.43
MSX2P35548 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
MSX2P35548 HSP90AA2P-201ENST00000530115 2196 ntBASIC6.11□□□□□ -1.43
MSX2P35548 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6.11□□□□□ -1.43
MSX2P35548 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
MSX2P35548 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
MSX2P35548 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.11□□□□□ -1.43
MSX2P35548 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC6.11□□□□□ -1.43
MSX2P35548 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSX2P35548 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms