Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC6.87□□□□□ -1.31
SMARCA1P28370 OR7E10P-201ENST00000526420 991 ntBASIC6.87□□□□□ -1.31
SMARCA1P28370 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
SMARCA1P28370 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC6.87□□□□□ -1.31
SMARCA1P28370 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC6.87□□□□□ -1.31
SMARCA1P28370 AC106785.3-201ENST00000564064 847 ntBASIC6.87□□□□□ -1.31
SMARCA1P28370 MIR4310-201ENST00000582950 57 ntBASIC6.87□□□□□ -1.31
SMARCA1P28370 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC6.87□□□□□ -1.31
SMARCA1P28370 AC006115.2-201ENST00000596823 202 ntBASIC6.87□□□□□ -1.31
SMARCA1P28370 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC6.87□□□□□ -1.31
SMARCA1P28370 AL583832.1-201ENST00000603227 784 ntBASIC6.87□□□□□ -1.31
SMARCA1P28370 BNIP3P31-201ENST00000604515 566 ntBASIC6.87□□□□□ -1.31
SMARCA1P28370 AL352984.2-202ENST00000613699 155 ntBASIC6.87□□□□□ -1.31
SMARCA1P28370 AC021422.1-201ENST00000621212 473 ntBASIC6.87□□□□□ -1.31
SMARCA1P28370 AC022400.9-201ENST00000623633 273 ntBASIC6.87□□□□□ -1.31
SMARCA1P28370 AC018659.2-201ENST00000624690 715 ntBASIC6.87□□□□□ -1.31
SMARCA1P28370 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC6.87□□□□□ -1.31
SMARCA1P28370 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
SMARCA1P28370 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
SMARCA1P28370 AC007114.2-201ENST00000576014 4281 ntBASIC6.87□□□□□ -1.31
SMARCA1P28370 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC6.87□□□□□ -1.31
SMARCA1P28370 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SMARCA1P28370 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
SMARCA1P28370 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SMARCA1P28370 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
SMARCA1P28370 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
SMARCA1P28370 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
SMARCA1P28370 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
SMARCA1P28370 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SMARCA1P28370 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.86□□□□□ -1.31
SMARCA1P28370 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
SMARCA1P28370 MTND4P9-201ENST00000507819 1346 ntBASIC6.86□□□□□ -1.31
SMARCA1P28370 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SMARCA1P28370 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
SMARCA1P28370 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC6.86□□□□□ -1.31
SMARCA1P28370 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.86□□□□□ -1.31
SMARCA1P28370 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.86□□□□□ -1.31
SMARCA1P28370 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.86□□□□□ -1.31
SMARCA1P28370 HSD17B7P1-201ENST00000412419 1017 ntBASIC6.86□□□□□ -1.31
SMARCA1P28370 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC6.86□□□□□ -1.31
SMARCA1P28370 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC6.86□□□□□ -1.31
SMARCA1P28370 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC6.86□□□□□ -1.31
SMARCA1P28370 AL365220.1-201ENST00000432923 399 ntBASIC6.86□□□□□ -1.31
SMARCA1P28370 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC6.86□□□□□ -1.31
SMARCA1P28370 RPS12P17-201ENST00000438591 377 ntBASIC6.86□□□□□ -1.31
SMARCA1P28370 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC6.86□□□□□ -1.31
SMARCA1P28370 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC6.86□□□□□ -1.31
SMARCA1P28370 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC6.86□□□□□ -1.31
SMARCA1P28370 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC6.86□□□□□ -1.31
SMARCA1P28370 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC6.86□□□□□ -1.31
SMARCA1P28370 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC6.86□□□□□ -1.31
SMARCA1P28370 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC6.86□□□□□ -1.31
SMARCA1P28370 AC016550.1-201ENST00000505348 785 ntBASIC6.86□□□□□ -1.31
SMARCA1P28370 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC6.86□□□□□ -1.31
SMARCA1P28370 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC6.86□□□□□ -1.31
SMARCA1P28370 RN7SKP248-201ENST00000516278 305 ntBASIC6.86□□□□□ -1.31
SMARCA1P28370 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC6.86□□□□□ -1.31
SMARCA1P28370 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.86□□□□□ -1.31
SMARCA1P28370 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC6.86□□□□□ -1.31
SMARCA1P28370 OTX2-203ENST00000554559 715 ntTSL 5 BASIC6.86□□□□□ -1.31
SMARCA1P28370 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
SMARCA1P28370 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC6.86□□□□□ -1.31
SMARCA1P28370 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SMARCA1P28370 AC017076.1-201ENST00000607613 578 ntBASIC6.86□□□□□ -1.31
SMARCA1P28370 AL355802.4-201ENST00000607635 548 ntBASIC6.86□□□□□ -1.31
SMARCA1P28370 AL021918.2-201ENST00000613415 194 ntBASIC6.86□□□□□ -1.31
SMARCA1P28370 AL096712.1-201ENST00000614561 159 ntBASIC6.86□□□□□ -1.31
SMARCA1P28370 AL139099.4-201ENST00000614802 114 ntBASIC6.86□□□□□ -1.31
SMARCA1P28370 AC241377.1-201ENST00000619797 406 ntBASIC6.86□□□□□ -1.31
SMARCA1P28370 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC6.86□□□□□ -1.31
SMARCA1P28370 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC6.86□□□□□ -1.31
SMARCA1P28370 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SMARCA1P28370 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC6.86□□□□□ -1.31
SMARCA1P28370 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC6.86□□□□□ -1.31
SMARCA1P28370 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
SMARCA1P28370 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
SMARCA1P28370 NAMPTP1-201ENST00000440465 2514 ntBASIC6.86□□□□□ -1.31
SMARCA1P28370 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
SMARCA1P28370 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SMARCA1P28370 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SMARCA1P28370 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.86□□□□□ -1.31
SMARCA1P28370 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SMARCA1P28370 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC6.85□□□□□ -1.31
SMARCA1P28370 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.85□□□□□ -1.31
SMARCA1P28370 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SMARCA1P28370 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SMARCA1P28370 AC005261.6-201ENST00000623072 1387 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
SMARCA1P28370 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC6.85□□□□□ -1.31
SMARCA1P28370 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC6.85□□□□□ -1.31
SMARCA1P28370 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
SMARCA1P28370 AC023490.2-201ENST00000359859 470 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 FIG4-202ENST00000368941 791 ntTSL 3 BASIC6.85□□□□□ -1.31
SMARCA1P28370 MIR620-201ENST00000385232 95 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
SMARCA1P28370 AL096800.1-201ENST00000405326 893 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 MIR1282-201ENST00000408865 101 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SMARCA1P28370 HMGN1P20-201ENST00000411849 300 ntBASIC6.85□□□□□ -1.31
SMARCA1P28370 SLC20A1P1-201ENST00000413906 956 ntBASIC6.85□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 146.8 ms