Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AC007671.2-201ENST00000637344 619 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC005332.9-201ENST00000620266 2921 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 ZNF542P-204ENST00000482727 1305 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 LINC01205-201ENST00000489670 1331 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC005702.3-201ENST00000585345 1447 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 LDHAP5-201ENST00000394996 622 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC241520.1-201ENST00000422654 1099 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 UBE2D3P4-201ENST00000441973 436 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 SNRPBP1-201ENST00000443634 282 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AL158214.1-201ENST00000444423 404 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC003035.2-201ENST00000448948 696 ntTSL 3 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 MARK2P8-201ENST00000476069 952 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC111000.2-201ENST00000507775 550 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC091849.1-201ENST00000509920 121 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 OR51A1P-201ENST00000511110 946 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 IGKV2-19-201ENST00000518132 283 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC084026.1-201ENST00000522028 564 ntTSL 4 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 OR52K3P-201ENST00000531655 943 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 UBTFL9-201ENST00000534504 1148 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AL049870.3-201ENST00000555157 360 ntTSL 2 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 DPRXP4-201ENST00000578053 568 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC011921.2-201ENST00000589465 152 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC097467.3-210ENST00000597939 705 ntTSL 5 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC004241.2-201ENST00000614562 444 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC018755.4-201ENST00000619715 454 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 OR4X2-201ENST00000624868 1025 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 ASB8-218ENST00000629941 278 ntTSL 5 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC006453.3-201ENST00000635891 377 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 AC110373.1-201ENST00000505994 3505 ntBASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC7.55□□□□□ -1.2
CCDC39Q9UFE4 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 ECM1P2-201ENST00000503354 1577 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 OFD1P17-201ENST00000437639 3018 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 MTND4P31-201ENST00000425607 1343 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 TET1P1-201ENST00000426627 2301 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AADAC-201ENST00000232892 1642 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 RNU1-59P-201ENST00000364829 162 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 RN7SKP130-201ENST00000364924 301 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 RNA5SP152-201ENST00000365184 110 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 UBBP1-201ENST00000392399 473 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AL139039.2-201ENST00000407436 479 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 AL136100.1-201ENST00000407696 330 ntBASIC7.54□□□□□ -1.2
CCDC39Q9UFE4 RN7SKP296-201ENST00000411185 341 ntBASIC7.54□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms