Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC064862.5-201ENST00000440618 334 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 OR13K1P-201ENST00000444577 975 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 RPL34P26-201ENST00000445636 354 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 UBBP5-201ENST00000446970 266 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC073476.1-201ENST00000452854 407 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC244505.3-201ENST00000454598 187 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC005410.1-202ENST00000460347 485 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 OR7E22P-201ENST00000478335 1035 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC008565.1-201ENST00000509046 885 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC117522.2-201ENST00000510049 657 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC010486.3-201ENST00000511602 785 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC109635.6-201ENST00000525487 1113 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 MTCO2P15-201ENST00000532655 656 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC005519.1-201ENST00000554490 601 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 OR11H3P-201ENST00000554547 982 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 RN7SL66P-201ENST00000582099 264 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 RPL29P33-201ENST00000587474 316 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC011921.2-201ENST00000589465 152 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC012175.1-201ENST00000603755 531 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 Metazoa_SRP.81-201ENST00000618466 316 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC109454.4-201ENST00000623411 649 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC068137.4-201ENST00000638485 296 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 ZNF733P-202ENST00000444809 1573 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 ZNF876P-202ENST00000398732 1485 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 TEK-202ENST00000406359 3935 ntTSL 2 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC017079.1-201ENST00000333650 415 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 RN7SKP184-201ENST00000362348 333 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 RNU4-7P-201ENST00000364758 141 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 SNORD116-8-201ENST00000384365 95 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 SNORD65C-201ENST00000390962 71 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 MTCO1P56-201ENST00000401674 224 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC246680.2-201ENST00000422106 389 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AL139415.1-201ENST00000424862 352 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 TXNL1P1-201ENST00000429528 554 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 RPEP4-201ENST00000437636 602 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC096632.2-201ENST00000438139 1239 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC011037.1-201ENST00000483964 558 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC073610.1-201ENST00000489971 396 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 SNRPCP11-201ENST00000492453 205 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 HIGD1AP18-201ENST00000520730 278 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 OR5AM1P-201ENST00000532136 1032 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC024145.1-201ENST00000535324 775 ntTSL 3 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC007923.1-201ENST00000577970 505 ntTSL 4 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC010503.3-201ENST00000594355 540 ntBASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms