Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.39□□□□□ -1.55
FOXA1P55317 AC118758.1-202ENST00000454719 225 ntBASIC5.39□□□□□ -1.55
FOXA1P55317 RN7SL583P-201ENST00000475692 287 ntBASIC5.39□□□□□ -1.55
FOXA1P55317 PPP1R11P1-201ENST00000486095 376 ntBASIC5.39□□□□□ -1.55
FOXA1P55317 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.39□□□□□ -1.55
FOXA1P55317 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.39□□□□□ -1.55
FOXA1P55317 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.39□□□□□ -1.55
FOXA1P55317 AC091912.1-201ENST00000511351 248 ntBASIC5.39□□□□□ -1.55
FOXA1P55317 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.39□□□□□ -1.55
FOXA1P55317 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC5.39□□□□□ -1.55
FOXA1P55317 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.39□□□□□ -1.55
FOXA1P55317 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC5.39□□□□□ -1.55
FOXA1P55317 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC5.39□□□□□ -1.55
FOXA1P55317 AC015802.2-201ENST00000589690 189 ntBASIC5.39□□□□□ -1.55
FOXA1P55317 AC097641.3-201ENST00000613523 464 ntBASIC5.39□□□□□ -1.55
FOXA1P55317 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC5.39□□□□□ -1.55
FOXA1P55317 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
FOXA1P55317 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.39□□□□□ -1.55
FOXA1P55317 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.39□□□□□ -1.55
FOXA1P55317 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.39□□□□□ -1.55
FOXA1P55317 RPS2P45-201ENST00000469997 2057 ntBASIC5.39□□□□□ -1.55
FOXA1P55317 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
FOXA1P55317 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.39□□□□□ -1.55
FOXA1P55317 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
FOXA1P55317 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
FOXA1P55317 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
FOXA1P55317 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC5.39□□□□□ -1.55
FOXA1P55317 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.39□□□□□ -1.55
FOXA1P55317 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
FOXA1P55317 AC137056.2-201ENST00000624055 1958 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
FOXA1P55317 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.38□□□□□ -1.55
FOXA1P55317 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.38□□□□□ -1.55
FOXA1P55317 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.38□□□□□ -1.55
FOXA1P55317 AC092681.1-201ENST00000297369 291 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
FOXA1P55317 SUGT1P2-201ENST00000379452 992 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 SNORA5.1-201ENST00000384275 131 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 AC004386.1-201ENST00000393214 761 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 AL009179.1-201ENST00000406085 265 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 AC007161.1-204ENST00000423039 460 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.38□□□□□ -1.55
FOXA1P55317 AC110602.1-201ENST00000437414 318 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC5.38□□□□□ -1.55
FOXA1P55317 AL512637.1-201ENST00000439523 1231 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 RN7SL188P-201ENST00000469842 285 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 SNRPCP3-201ENST00000474888 476 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 AC022215.1-201ENST00000481770 362 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 NENFP3-201ENST00000503735 313 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC5.38□□□□□ -1.55
FOXA1P55317 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 AC011853.1-201ENST00000518911 454 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 MRPS16P1-201ENST00000523462 412 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC5.38□□□□□ -1.55
FOXA1P55317 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.38□□□□□ -1.55
FOXA1P55317 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC5.38□□□□□ -1.55
FOXA1P55317 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.38□□□□□ -1.55
FOXA1P55317 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC5.38□□□□□ -1.55
FOXA1P55317 AC025574.2-201ENST00000615621 514 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 AL591926.1-201ENST00000620542 217 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 AC063952.1-203ENST00000634410 658 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 OR8G3P-202ENST00000641572 1255 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
FOXA1P55317 SLC9B1P1-201ENST00000331172 1337 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
FOXA1P55317 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.38□□□□□ -1.55
FOXA1P55317 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
FOXA1P55317 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
FOXA1P55317 CAP1P2-201ENST00000417455 1409 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
FOXA1P55317 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
FOXA1P55317 AC003973.3-201ENST00000624863 2822 ntBASIC5.38□□□□□ -1.55
FOXA1P55317 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
FOXA1P55317 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
FOXA1P55317 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
FOXA1P55317 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
FOXA1P55317 AC100757.1-201ENST00000616872 1835 ntBASIC5.37□□□□□ -1.55
FOXA1P55317 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.37□□□□□ -1.55
FOXA1P55317 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
FOXA1P55317 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
FOXA1P55317 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
FOXA1P55317 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.37□□□□□ -1.55
FOXA1P55317 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
FOXA1P55317 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
FOXA1P55317 OR56A4-201ENST00000330728 1209 ntBASIC5.37□□□□□ -1.55
FOXA1P55317 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
FOXA1P55317 OOSP1-201ENST00000398992 1270 ntBASIC5.37□□□□□ -1.55
FOXA1P55317 PPIAP9-201ENST00000403866 498 ntBASIC5.37□□□□□ -1.55
FOXA1P55317 AC099535.1-201ENST00000408928 371 ntBASIC5.37□□□□□ -1.55
FOXA1P55317 LSM5-203ENST00000409782 649 ntTSL 5 BASIC5.37□□□□□ -1.55
FOXA1P55317 AC079809.1-201ENST00000415468 276 ntBASIC5.37□□□□□ -1.55
FOXA1P55317 AC066692.1-201ENST00000421721 457 ntBASIC5.37□□□□□ -1.55
FOXA1P55317 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.37□□□□□ -1.55
FOXA1P55317 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.37□□□□□ -1.55
FOXA1P55317 IGBP1P3-201ENST00000447449 1000 ntBASIC5.37□□□□□ -1.55
FOXA1P55317 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
FOXA1P55317 AL359839.1-201ENST00000451975 1160 ntBASIC5.37□□□□□ -1.55
FOXA1P55317 AP002884.1-201ENST00000479691 655 ntBASIC5.37□□□□□ -1.55
FOXA1P55317 RPS3AP15-201ENST00000483874 781 ntBASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms