Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
HOXC9P31274 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
HOXC9P31274 RNU1-106P-201ENST00000384382 164 ntBASIC7.42□□□□□ -1.22
HOXC9P31274 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC7.42□□□□□ -1.22
HOXC9P31274 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC7.42□□□□□ -1.22
HOXC9P31274 DSTNP5-201ENST00000427921 523 ntBASIC7.42□□□□□ -1.22
HOXC9P31274 RPS27P18-201ENST00000431701 247 ntBASIC7.42□□□□□ -1.22
HOXC9P31274 PSMD10P3-201ENST00000437000 448 ntBASIC7.42□□□□□ -1.22
HOXC9P31274 AL596266.1-201ENST00000448132 400 ntBASIC7.42□□□□□ -1.22
HOXC9P31274 RPL7AP6-201ENST00000477943 801 ntBASIC7.42□□□□□ -1.22
HOXC9P31274 RPSAP50-201ENST00000481955 852 ntBASIC7.42□□□□□ -1.22
HOXC9P31274 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
HOXC9P31274 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC7.42□□□□□ -1.22
HOXC9P31274 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC7.42□□□□□ -1.22
HOXC9P31274 AL163952.1-202ENST00000569625 600 ntBASIC7.42□□□□□ -1.22
HOXC9P31274 RN7SL708P-201ENST00000580952 299 ntBASIC7.42□□□□□ -1.22
HOXC9P31274 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC7.42□□□□□ -1.22
HOXC9P31274 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
HOXC9P31274 CDC42EP3P1-201ENST00000601004 764 ntBASIC7.42□□□□□ -1.22
HOXC9P31274 AL121612.2-201ENST00000612261 482 ntBASIC7.42□□□□□ -1.22
HOXC9P31274 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC7.42□□□□□ -1.22
HOXC9P31274 AL450226.2-201ENST00000622913 439 ntBASIC7.42□□□□□ -1.22
HOXC9P31274 AP002505.2-201ENST00000623585 696 ntBASIC7.42□□□□□ -1.22
HOXC9P31274 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC7.42□□□□□ -1.22
HOXC9P31274 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC7.42□□□□□ -1.22
HOXC9P31274 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
HOXC9P31274 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
HOXC9P31274 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC7.42□□□□□ -1.22
HOXC9P31274 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
HOXC9P31274 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
HOXC9P31274 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC7.42□□□□□ -1.22
HOXC9P31274 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC7.42□□□□□ -1.22
HOXC9P31274 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC7.42□□□□□ -1.22
HOXC9P31274 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC7.41□□□□□ -1.22
HOXC9P31274 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
HOXC9P31274 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC7.41□□□□□ -1.22
HOXC9P31274 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
HOXC9P31274 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
HOXC9P31274 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC7.41□□□□□ -1.22
HOXC9P31274 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
HOXC9P31274 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC7.41□□□□□ -1.22
HOXC9P31274 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
HOXC9P31274 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC7.41□□□□□ -1.22
HOXC9P31274 AC007161.1-204ENST00000423039 460 ntBASIC7.41□□□□□ -1.22
HOXC9P31274 RPL12P3-201ENST00000440080 396 ntBASIC7.41□□□□□ -1.22
HOXC9P31274 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC7.41□□□□□ -1.22
HOXC9P31274 RN7SL447P-201ENST00000494711 245 ntBASIC7.41□□□□□ -1.22
HOXC9P31274 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC7.41□□□□□ -1.22
HOXC9P31274 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC7.41□□□□□ -1.22
HOXC9P31274 AC027667.1-201ENST00000545814 304 ntBASIC7.41□□□□□ -1.22
HOXC9P31274 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC7.41□□□□□ -1.22
HOXC9P31274 MIR3691-201ENST00000578066 90 ntBASIC7.41□□□□□ -1.22
HOXC9P31274 NANOGP3-201ENST00000605855 286 ntBASIC7.41□□□□□ -1.22
HOXC9P31274 WBP1LP8-201ENST00000617401 327 ntBASIC7.41□□□□□ -1.22
HOXC9P31274 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC7.41□□□□□ -1.22
HOXC9P31274 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
HOXC9P31274 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC7.41□□□□□ -1.22
HOXC9P31274 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
HOXC9P31274 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
HOXC9P31274 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
HOXC9P31274 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC7.41□□□□□ -1.22
HOXC9P31274 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC7.41□□□□□ -1.22
HOXC9P31274 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC7.41□□□□□ -1.22
HOXC9P31274 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC7.41□□□□□ -1.22
HOXC9P31274 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
HOXC9P31274 ZNF658B-201ENST00000602828 3408 ntBASIC7.4□□□□□ -1.22
HOXC9P31274 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC7.4□□□□□ -1.22
HOXC9P31274 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.22
HOXC9P31274 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
HOXC9P31274 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC7.4□□□□□ -1.22
HOXC9P31274 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
HOXC9P31274 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
HOXC9P31274 EPGN-201ENST00000332112 847 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
HOXC9P31274 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
HOXC9P31274 AL009179.1-201ENST00000406085 265 ntBASIC7.4□□□□□ -1.22
HOXC9P31274 RN7SKP125-201ENST00000410481 302 ntBASIC7.4□□□□□ -1.22
HOXC9P31274 RN7SKP213-201ENST00000410746 298 ntBASIC7.4□□□□□ -1.22
HOXC9P31274 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC7.4□□□□□ -1.22
HOXC9P31274 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC7.4□□□□□ -1.22
HOXC9P31274 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC7.4□□□□□ -1.22
HOXC9P31274 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC7.4□□□□□ -1.22
HOXC9P31274 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC7.4□□□□□ -1.22
HOXC9P31274 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC7.4□□□□□ -1.22
HOXC9P31274 RSU1P1-201ENST00000453416 441 ntBASIC7.4□□□□□ -1.22
HOXC9P31274 MEMO1P4-201ENST00000453590 386 ntBASIC7.4□□□□□ -1.22
HOXC9P31274 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
HOXC9P31274 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
HOXC9P31274 snoU109.5-201ENST00000516231 132 ntBASIC7.4□□□□□ -1.22
HOXC9P31274 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC7.4□□□□□ -1.22
HOXC9P31274 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC7.4□□□□□ -1.22
HOXC9P31274 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC7.4□□□□□ -1.22
HOXC9P31274 AL513327.3-201ENST00000602618 469 ntBASIC7.4□□□□□ -1.22
HOXC9P31274 AC109583.2-201ENST00000617367 129 ntBASIC7.4□□□□□ -1.22
HOXC9P31274 AC090510.2-201ENST00000617465 629 ntBASIC7.4□□□□□ -1.22
HOXC9P31274 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC7.4□□□□□ -1.22
HOXC9P31274 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.22
HOXC9P31274 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
HOXC9P31274 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC7.4□□□□□ -1.22
HOXC9P31274 HSPD1P8-201ENST00000400121 1658 ntBASIC7.4□□□□□ -1.23
HOXC9P31274 EBLN2-201ENST00000533473 1679 ntAPPRIS P1 BASIC7.4□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 150.3 ms