Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC007485.2-201ENST00000623493 1667 ntBASIC7.02□□□□□ -1.29
COL6A1P12109 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC7.02□□□□□ -1.29
COL6A1P12109 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC7.02□□□□□ -1.29
COL6A1P12109 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL6A1P12109 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL6A1P12109 PSG10P-201ENST00000501199 1500 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC7.01□□□□□ -1.29
COL6A1P12109 BTK-209ENST00000618050 2417 ntTSL 5 BASIC7.01□□□□□ -1.29
COL6A1P12109 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC7.01□□□□□ -1.29
COL6A1P12109 ERG-202ENST00000398897 4651 ntTSL 5 BASIC7.01□□□□□ -1.29
COL6A1P12109 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL6A1P12109 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC7.01□□□□□ -1.29
COL6A1P12109 AF287957.1-201ENST00000607368 1595 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL6A1P12109 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
COL6A1P12109 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
COL6A1P12109 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC7.01□□□□□ -1.29
COL6A1P12109 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
COL6A1P12109 OR3A2-201ENST00000408891 1076 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC7.01□□□□□ -1.29
COL6A1P12109 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC7.01□□□□□ -1.29
COL6A1P12109 AL627308.1-201ENST00000435693 821 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 SUMO2P3-201ENST00000438311 288 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC7.01□□□□□ -1.29
COL6A1P12109 KATNBL1P3-201ENST00000443475 909 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC7.01□□□□□ -1.29
COL6A1P12109 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC7.01□□□□□ -1.29
COL6A1P12109 SNX18P26-201ENST00000458433 740 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 RN7SL799P-201ENST00000475891 298 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 NPM1P17-201ENST00000479221 602 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 RN7SL561P-201ENST00000488553 281 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
COL6A1P12109 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC7.01□□□□□ -1.29
COL6A1P12109 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC7.01□□□□□ -1.29
COL6A1P12109 AC112673.1-201ENST00000513168 575 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC7.01□□□□□ -1.29
COL6A1P12109 MTCO3P27-201ENST00000514397 196 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 RNU6-1102P-201ENST00000516149 96 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
COL6A1P12109 AC104115.2-201ENST00000523026 687 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC7.01□□□□□ -1.29
COL6A1P12109 OSBPL9P3-201ENST00000534523 595 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC7.01□□□□□ -1.29
COL6A1P12109 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC7.01□□□□□ -1.29
COL6A1P12109 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC7.01□□□□□ -1.29
COL6A1P12109 AC005951.1-201ENST00000576706 485 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 AC016839.1-201ENST00000578162 867 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC7.01□□□□□ -1.29
COL6A1P12109 AL157899.1-201ENST00000604110 936 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 AC067838.1-201ENST00000606064 577 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 AL513218.1-201ENST00000606527 391 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 AL354718.1-201ENST00000619764 589 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 AL136228.1-201ENST00000622221 319 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
COL6A1P12109 MAPK10-323ENST00000641493 3207 ntBASIC7.01□□□□□ -1.29
COL6A1P12109 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL6A1P12109 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL6A1P12109 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL6A1P12109 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
COL6A1P12109 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL6A1P12109 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL6A1P12109 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
COL6A1P12109 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
COL6A1P12109 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL6A1P12109 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL6A1P12109 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC7□□□□□ -1.29
COL6A1P12109 PROS2P-201ENST00000474651 1951 ntBASIC7□□□□□ -1.29
COL6A1P12109 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC7□□□□□ -1.29
COL6A1P12109 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL6A1P12109 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL6A1P12109 AC034229.2-201ENST00000566945 2508 ntBASIC7□□□□□ -1.29
COL6A1P12109 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC7□□□□□ -1.29
COL6A1P12109 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC7□□□□□ -1.29
COL6A1P12109 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
COL6A1P12109 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC7□□□□□ -1.29
COL6A1P12109 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC7□□□□□ -1.29
COL6A1P12109 CDC27P2-201ENST00000425026 1922 ntBASIC7□□□□□ -1.29
COL6A1P12109 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC7□□□□□ -1.29
COL6A1P12109 RN7SKP160-201ENST00000363804 340 ntBASIC7□□□□□ -1.29
COL6A1P12109 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC7□□□□□ -1.29
COL6A1P12109 RNU11-6P-201ENST00000391127 133 ntBASIC7□□□□□ -1.29
COL6A1P12109 GLS-203ENST00000409215 632 ntTSL 4 BASIC7□□□□□ -1.29
COL6A1P12109 RNU2-22P-201ENST00000411266 212 ntBASIC7□□□□□ -1.29
COL6A1P12109 AC245096.1-201ENST00000413104 546 ntBASIC7□□□□□ -1.29
COL6A1P12109 PTP4A1P1-201ENST00000420539 515 ntBASIC7□□□□□ -1.29
COL6A1P12109 AC091390.2-201ENST00000432573 374 ntBASIC7□□□□□ -1.29
COL6A1P12109 AL035246.1-201ENST00000433554 1255 ntBASIC7□□□□□ -1.29
COL6A1P12109 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC7□□□□□ -1.29
COL6A1P12109 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC7□□□□□ -1.29
COL6A1P12109 AL590399.4-201ENST00000436561 601 ntBASIC7□□□□□ -1.29
COL6A1P12109 MRPS21P3-201ENST00000436696 262 ntBASIC7□□□□□ -1.29
COL6A1P12109 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC7□□□□□ -1.29
COL6A1P12109 YWHAEP1-201ENST00000453697 763 ntBASIC7□□□□□ -1.29
COL6A1P12109 RPSAP37-201ENST00000470913 821 ntBASIC7□□□□□ -1.29
COL6A1P12109 AC104982.1-201ENST00000478775 574 ntBASIC7□□□□□ -1.29
COL6A1P12109 AC022415.1-202ENST00000486612 523 ntBASIC7□□□□□ -1.29
COL6A1P12109 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC7□□□□□ -1.29
COL6A1P12109 AC020699.1-201ENST00000505161 445 ntBASIC7□□□□□ -1.29
COL6A1P12109 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC7□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms